Rosa chinensis (China rose): 112172403
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Entry
112172403 CDS
T06020
Name
(RefSeq) elongation factor 1-alpha isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112172403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112172403
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112172403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
Zn_ribbon_RanBP
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
112172403
NCBI-ProteinID:
XP_024165495
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All DBs
Position
6:63999890..64005922
Genome browser
AA seq
764 aa
AA seq
DB search
MPRKVNYGLDYDDEDYDAYEDYDYDHDDDLEIENNGKEPELKQETVRRDVWRCSICTYDN
EEGLTACDICGVLRKPLGRVGSNIDKKTVEGRCKDSGASVMAKCLFASLPRKITQKAVLF
HQQKDDFLIEEGNKFYKLGDIQGPIHEFQNTFIIHKNDDINIAPFKFDVPSPDDVVSNGL
RSSKVGSKASVSDVESSGVSSKAAKKNSAVRAQSSAEWSDSSSTAAQKDQQARLDKGISS
GNRAFSHPHGSSGTTTIQSNGSLSDSSSLQPTSSHMEEGISSLVIGGKPESLTTSSKNMS
SDARSGHSKIVSSRGSHSRADYKPEKWMLPDEADDTLTQMNLAIVGHVDSGKSTLSGRLL
HLLGRVSKKDMHKYEKEAKSQGKGSFAYAWALDESAEERERGITMNVAVAYFDSRKYHVV
VLDSPGHKDFVPNMISGATQADAAILLVDASCGAFEAGIKGQTMEHAQLIRSFGVDQIIV
AVNKMDVVEYSKDRFDEIKQTLGTFLHSRGFKDSSVYWVPLSVMENQNLVSAPSEARLLS
WYRGPSLLDSIDSLQPPTRDFQRPLLMPICDVIRSTSLGQVSACGKLEAGALRSGSKVLV
MPSGELGTVRSLERDSQACSIARAGDNVGVTLQGIDGGHVMAGGVLCHPGFPVAVAKHLE
LKVLLLDVATPILIGSQVEFHIHHAKEAATVVKILSLIDPKGKVTKKSPRCLLAKQRAVI
EVVLQGPVCVEEYTSSKALGSVSLRASGNTVALGVVSRIIKEQE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaagtaaactacgggcttgattacgatgatgaagactacgatgcctatgaa
gattatgattatgaccatgacgacgatttggaaatagaaaataatggcaaagaacctgag
ttaaagcaggaaactgtaaggcgtgatgtttggcgttgttccatttgtacatatgataat
gaagaaggtttgactgcgtgtgacatttgtggggttcttcgtaaacctttgggtagagtt
ggaagcaatattgataagaaaacagttgaaggcagatgcaaagattctggagcatccgta
atggccaagtgtctttttgcatcgttgccgcgcaagataacccaaaaggctgtattattt
catcagcagaaagatgattttctgatagaagagggaaataagttctacaagcttggggat
atccaaggacccattcatgaattccaaaacacttttattattcataagaatgatgatatt
aatatagctcctttcaagtttgatgttccatccccagatgatgtggtttccaacggattg
cgatcctccaaagtgggttcaaaagccagtgttagtgacgtagagtcttcgggagtttcc
tcgaaagctgctaagaagaatagtgcagttagggcacaatcaagtgctgaatggtcagat
agctcatctactgcagcacaaaaagaccaacaagctagattagataagggaatttcatca
gggaatagggcatttagccatccccatggaagtagtggcaccacaactatacaatcaaat
ggtagtttgtcggacagttcatccttgcagccaacaagctctcatatggaagagggcatt
agttctttagtgattggaggcaagcctgagagtcttactactagctctaagaacatgtct
tccgatgctagatctgggcattcgaaaattgttagttctagaggatcgcattcacgagca
gactataaacctgaaaaatggatgcttcctgacgaagctgatgatacattgactcaaatg
aatcttgcaattgttggacatgttgattcaggaaaatcaacactctcaggtagactgctt
caccttttgggacgggtatctaaaaaagacatgcacaaatatgagaaagaggcaaagtca
cagggcaaggggtcgtttgcatatgcttgggcattggatgagagtgcagaagaaagggaa
agaggaataactatgaatgtggctgttgcatattttgattccagaaagtatcatgttgtt
gtgctggattctcctggccataaagactttgttccaaacatgatatctggggcaacacaa
gctgatgctgcaatacttcttgtagatgcttcgtgtggtgcatttgaagctggtataaag
ggacagactatggaacatgcacaacttatcagaagctttggtgttgatcaaattatagtt
gcggttaacaagatggatgttgttgaatactccaaggatcgatttgatgaaattaaacag
acacttggaacatttctccattcccgtggcttcaaagattcttcagtgtattgggttcca
ttgagtgtcatggaaaatcaaaatttggtatcagctccttctgaggctcgtttgttgtct
tggtatcgtggaccttccctgttggattcaattgattcccttcaacctcccacgagagat
tttcaaaggccactgctcatgccaatatgtgatgtcattagatctacttctctgggacag
gtgtctgcttgtggtaaattggaagcaggagctcttcggagtggatcaaaggttctggtt
atgccttcaggagaattagggactgtccgctctttagaacgggattctcaggcatgttcc
attgcaagagctggtgacaatgtgggtgttactcttcaaggcattgatggtggtcatgtg
atggcagggggcgtgctctgtcaccctggttttccggttgcagttgcaaaacatttggaa
ttgaaagtgcttcttttggatgtcgccacccctattttaattggctctcaggtggaattt
cacatacaccacgccaaggaggctgcaacagttgtaaaaatattgtcattaattgaccca
aagggaaaagtgacgaaaaagtctcctcgctgtctacttgcaaagcagagggctgttata
gaggtagttttgcaaggaccagtttgtgtggaagagtatacaagttccaaagctctaggg
agcgtatctctgagggcatcaggaaacactgtggccctcggtgttgtaagccggattata
aaggagcaggagtag
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