Rosa chinensis (China rose): 112172854
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Entry
112172854 CDS
T06020
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11 isoform X1
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112172854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112172854
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112172854
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112172854
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112172854
NCBI-ProteinID:
XP_024166116
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All DBs
Position
6:23316053..23317494
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AA seq
352 aa
AA seq
DB search
MMIVQRGIPIFPTGPASHFHGGVPVVFHRRPMPPIPLHHRPIPLYPPQFQSRVPVFRVVG
APICRQGSVKKADRFEVRSVCRYNFKAEIAVIQSLIRAGYRFASFDTEFPGTVVKSEIPK
HLISQAVPVDVYKMMKTNVDQTHIIQLGLSLSDPFGNLPVCDGAYCCWEFNFSDFDVDCA
QHLRNSVSIDVLKRQGIDFPENKCTGICSADFAEEIERSGLVELLPCLTWATFQSAYDFG
YLIKMFTGNKELPEDINEFMGNVKTYFGPNVYDIKYMMKFCDGLFGGLNRVAETLGVDRV
AGSSHQAGSDSLLTLQTFVKMLKMEKNKGKELWEECGGVLFGLGSLDFWHHC
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagttcagagaggaattccgatcttcccaactgggcctgcttctcatttccac
ggcggagttccggtggtcttccaccgccgacctatgcctccgattcctctacaccaccgc
cctatacccctttatcctcctcaatttcagagccgcgtccctgttttccgcgttgtcggc
gccccaatttgtcgtcaaggatctgtgaagaaagccgatcggttcgaggttcgaagtgtt
tgtcgctataatttcaaagccgagattgccgtaattcagagtctaatcagggccggctac
cgatttgctagtttcgacaccgaattccccgggacagtggttaaatccgaaattccgaaa
catctgatatctcaagctgttccggttgatgtgtataagatgatgaagaccaatgtggac
caaacccatattatccaattgggtctttcactctctgaccctttcgggaatttgccggtt
tgtgatggtgcttactgttgttgggagtttaatttcagtgattttgatgtggactgtgct
caacatttgcggaatagtgtctcgattgatgtcctgaagcggcaaggaatagactttccc
gaaaacaaatgcactggtatttgttctgcagacttcgctgaggaaattgagaggtctggg
ctagtggagttgcttccttgcttgacttgggctaccttccagagtgcatatgattttggg
tacttgataaagatgttcactgggaacaaggaattgccagaggatatcaacgagttcatg
ggcaatgtgaagacatattttggaccgaatgtgtacgacatcaagtacatgatgaagttc
tgtgatggactgtttggcggtttgaatagagtggcagaaacccttggcgttgaccgtgtg
gctgggagtagccaccaggctggttctgatagtcttttgacactgcaaacgtttgtcaag
atgctcaagatggagaagaacaaagggaaagagctctgggaagaatgtggaggagttttg
tttggtttaggaagcttggatttctggcatcattgttga
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