Rosa chinensis (China rose): 112173054
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Entry
112173054 CDS
T06020
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcn03009
]
112173054
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
112173054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IP5PC_F
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_VPS8
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
WDR54
Beta-prop_SCAP
KNTC1_N
Beta-prop_WDR35_TULP_N
Ge1_WD40
VPS8_N
DUF465
Motif
Other DBs
NCBI-GeneID:
112173054
NCBI-ProteinID:
XP_024166366
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Position
6:complement(66218730..66222412)
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AA seq
442 aa
AA seq
DB search
MEVVVASSSVEADIACWDFNTGAELLRYKSCASPNHGLVSVGDRFLASSQLRQTNGSVKY
WAWSKPQPDARSSQDEPIRPLAANREGTYVAGGGVSGTIYLWEVTSGRLLKKWDAHYRGV
SCLKFSDDGTILFSGSEDGEIRVWNLVTLFDDHQTQHEKHRYLLSFTEHSLSVTDMVLGF
GYDPIIVSASEDRTCKIWSFSRETLLRNIVFPTIIDAIAMDPGENLLFAGGRDGNIYVAA
LNTARTASSKYGMHILNRFSNHSKAVTCLAWGLSGNYLISGSEDGVVRVWDAKTANIVRV
LKHAKGPVNNILVIRQQVSQMIPNSQASSRRHGSSLPPPLEKRIYEADKDAGFKAVIGLQ
DTCSKSTAAVFVSSDMMERQIRELQQQGSASAEMEIERLKLENKKCIQMVQQWKKMYDNL
HQFCVNELVDGDKGGAPNGNAP
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggtggtggcctcctcttccgtcgaagcagacatcgcctgctgggacttcaac
accggcgccgagctcctccggtacaagtcctgcgcctctcccaatcacggcctcgtctcc
gtcggcgaccgattcctcgcctcctcccagctccgtcagaccaatggctctgtcaagtac
tgggcctggtctaaacctcaacctgatgccaggagctcgcaagacgaaccgatcaggccg
cttgctgctaacagagagggcacctatgttgctggtggaggtgtctctgggactatctac
ttgtgggaggttactagcggtaggctgcttaagaagtgggatgctcattatagaggtgtg
agttgcttgaaattttcagatgatggcaccatactgttttcggggtctgaggatggagaa
attagagtgtggaaccttgtaacgctattcgatgatcatcaaactcaacatgaaaagcat
cggtacttgcttagttttaccgagcattcgctttctgtaacggatatggtgttaggattt
ggatatgatcccattattgtgtcggcttcagaggatcgaacgtgcaagatttggagcttt
tcaagagaaacattattgagaaatattgtttttcccacaataattgacgcaattgcaatg
gatcccggtgaaaatctcctctttgctggtggtagagatggaaatatatatgtggccgca
cttaatactgcaaggacagctagcagcaaatatggaatgcatatcctcaatcgcttctca
aatcacagcaaggcagttacttgcttggcgtggggactatctggaaactatttgatttct
ggatcagaggatggcgtggttcgagtatgggatgctaaaactgctaacattgtccgtgtg
ctcaaacatgcaaaaggtccagtgaataatattctagttattagacagcaagtttctcag
atgatcccaaattcacaagcctcctctagaaggcatggttcctcattaccacctccacta
gaaaagcgtatatatgaagcagataaagatgcaggttttaaggcagtcatcggtctccag
gatacttgcagtaaatctacagctgcagtgtttgtctcttccgacatgatggagcgtcaa
atcagagagcttcagcaacaaggttctgcttcagcggaaatggagattgagagactaaag
cttgagaataaaaaatgcatacaaatggttcagcagtggaagaaaatgtatgacaatttg
caccagttctgtgtaaatgagcttgttgatggtgataaaggaggagccccaaatggaaat
gccccctga
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