Rosa chinensis (China rose): 112173122
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Entry
112173122 CDS
T06020
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112173122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112173122
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112173122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
112173122
NCBI-ProteinID:
XP_024166444
LinkDB
All DBs
Position
6:62722489..62723936
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AA seq
431 aa
AA seq
DB search
MAQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKNEKEAKSQGKGSFAYAWALDESV
EERERGITMSVAVAYFDSKNYKVVVLDSPGHRDFVPNMISGATQADAAVLVVDGSHGAFE
AGMKGGQTKEHAQIIKSFGVKQIIVAVNKMDVVGYSKDRFDEIKHTLGTFLWRSCRFENS
SVCWVPLSAMENQNLVSAPSDDRLLSWYSGLCFLDAVDSLQPPKRESDKLLLMPICDVIK
SSKGQVSACGKLQAGALQNGLKVRVMPSGELGTVRSLERDGSQSCSTATAGDNVAVTLQG
IDDRHVMAGGVLCDPDVPVAFAKHLELNVQLLDGAKPLLVGSQLEFHIHHAKEAARVVKI
ASLLDPKTLKVAKRSPRCLLAKQVAVIEVVLQGPVCVVEYSMCRALGNVSLRALGNTVAL
GKVTRIIEKQK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggctcaactgaatcttgcaattgttggacatgtcgattcgggaaaatcgacactttca
ggtagactgcttcatctattgggaaggatatccaaaaaagaaatgcacaaaaatgagaaa
gaggcaaagtcacagggcaaggggtcatttgcatatgcgtgggcattggatgagagcgta
gaagaaagagaaagaggaataactatgagtgtagctgttgcatattttgactccaaaaat
tacaaggttgttgtgctggactctcctggccacagagactttgtcccgaacatgatctcc
ggcgcaacacaagccgatgctgcagtacttgttgttgatggttcacatggtgcatttgaa
gccggtatgaagggaggacagactaaggagcatgcacagatcatcaaaagcttcggcgtc
aagcagattatagttgctgttaacaagatggatgttgttggctactccaaggatagattt
gatgaaatcaaacacacactaggaacatttctctggcgttcctgtcgtttcgaaaattct
tcggtgtgttgggttccattgagtgccatggagaatcagaacttggtgtcagctccttct
gatgaccgtttgttgtcttggtatagcggactttgcttcttggatgcagttgattccctt
caacctccgaagagagagtctgacaagttactgctcatgcctatatgtgatgtcattaaa
tcttctaaagggcaggtttctgcttgtggtaaattgcaagctggagctcttcaaaatgga
cttaaggttcgggttatgccttcgggagaattagggactgtccggtctttagaacgtgac
ggctctcagtcatgctcaactgccacagctggtgacaatgtggctgttactctacaaggg
attgatgatcgtcatgtgatggcaggaggcgtgctatgtgaccctgatgttccagttgca
tttgcgaaacatttggaattgaatgtgcaacttttggacggggcaaagcctttgttggtt
ggctctcagctggagtttcacatacaccacgcaaaggaggcagcaagagtcgtgaaaata
gcttcattacttgatccgaagactcttaaagtggcgaaaaggtctcctcgctgtcttctg
gcaaagcaggtagctgttatagaggtagttctgcaaggaccagtttgtgtggtggagtac
tccatgtgtagagctctagggaacgtttctttgagagcgttaggaaacactgtggccctc
ggcaaggtaacacgaataatcgagaagcagaagtag
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