Rosa chinensis (China rose): 112173595
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Entry
112173595 CDS
T06020
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112173595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112173595
03036 Chromosome and associated proteins [BR:
rcn03036
]
112173595
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112173595
Coactivators
SAGA/TFTC/STAGA complex
112173595
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112173595
STAGA complex
112173595
TFTC complex
112173595
SAGA complex
112173595
SLIK complex
112173595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Tricorn_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_DCAF12
PALB2_WD40
Beta-prop_ACSF4
Cytochrom_D1
Mon2_C
Motif
Other DBs
NCBI-GeneID:
112173595
NCBI-ProteinID:
XP_024167036
LinkDB
All DBs
Position
6:60621811..60627731
Genome browser
AA seq
666 aa
AA seq
DB search
MDEEKLQKFVEAYLKKKGLKLTEHALQEELQPSSSPVSQFDPDVVRQILAFSEFEDGPAR
YQDGYAKLRSWTYTSLDLYRHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNSFREDHEM
MHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYELLLQFLHKSQSTTMLGII
NEHINFQVSPGQPSSITDDAEAVTLTGGSQESANQINQKEIHWGLLEDSLEERLEKAGGM
ALDSEKAEGETKEGEGDENKKKSIEGGKQGASIKKQKKDKAVSATVKSARPEATTVPTAP
RVKPELTLPVIPTEVEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCSSISHDGSL
VAGGFSDSSLKVWDMAKIGQQYVGSILQGENGTASSEQVAGSNGRKRPYTLFQGHSGPVY
SATFNPLSDFILSSSADSTIRLWSTNLNSNLVCYKGHNYPVWDVQFSPVGHYFASASHDR
TARIWSMDRIQPLRIMAGHLSDVDCVQWHSNCNYIATGSSDKTVRLWDVQSGECVRIFIG
HRSMILSLAMSPDGRYMASGDEDGSIMMWDLSSGRCVTPLMGHTSCVWTLAFSGEGSLLA
SGSADCTVKLWDVTASTKLPKAEEKSGSASRLRSLKTLPTKCTPVYSLRFSRRNLLFAAG
VLSKTV
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagaagcttcagaaattcgtggaagcctacctgaagaagaaagggctcaag
ttaacggagcacgctctccaagaagaacttcagccgtcttcctccccggtctctcaattc
gaccccgacgtcgtcaggcaaatcctcgccttctccgaatttgaggatggtccagcacgt
taccaagatggatatgccaagttgaggtcatggacttatacttctctggatttgtaccgg
catgagttgcttcgtgttctttatccggtattcattcattgtttcatggatctggttgcc
aaaggtcatattcaagaagctcggacatttttcaatagcttccgtgaagaccatgaaatg
atgcacctacgagatctacagaagttggaaggagttctttctccctctcatttagaggag
atggaatttgctcattctcttaggcaaagcaaagtgaacataaagatatgtcagtactcc
tacgagcttctgctacagtttttgcacaagtcacagtccaccacaatgcttgggattatc
aatgagcatattaatttccaagtttctcctggacaacctagctcaattactgatgatgct
gaggctgtaacacttactggaggcagccaggagtcggctaatcaaataaaccagaaggaa
attcattgggggttgcttgaagattccttggaagaacgcttggaaaaggccgggggaatg
gctttagattctgaaaaagcagaaggggaaaccaaagaaggggagggtgatgaaaataag
aaaaaatcaattgaaggaggtaaacagggtgcttcaatcaaaaagcaaaaaaaggacaag
gctgttagtgcaacagtgaaaagtgcacgccccgaggcaaccactgtacctacagcacca
cgagtcaaaccagaacttactttgccagtaattccaacagaagttgaacagtctattctt
gaggacttgagaaaccgtgtacagttgagtagtgctgcgttgccatctgtcagcttttat
acatttatcaacacacacaatgggttaaattgttcatctatatcccatgatggatccctg
gttgctggtggattttctgactcgtcgctgaaggtctgggatatggcaaagatagggcaa
caatatgttggttcaattctgcagggtgaaaatggtaccgcttcaagtgaacaagttgct
ggatcaaatggtaggaaaaggccatatacattgtttcagggtcattcagggccagtttat
tctgctactttcaatcctctgagtgattttatactttcctcttcagcagactcaactatt
cggttgtggagcacaaacctaaattccaatcttgtttgctacaagggtcataactaccct
gtttgggatgttcagtttagcccagtaggtcattattttgccagtgcatcacatgataga
acagcaagaatttggtctatggacagaatacagcctctgagaataatggcagggcactta
tctgatgttgattgtgtacaatggcattccaactgcaactacattgcaactggttctagt
gacaaaacagttagattatgggacgtgcagagtggagagtgtgtccgaatattcattggc
cacaggagtatgattttatctcttgcaatgtcacctgatggtcggtacatggcttcgggt
gatgaagatggctcaatcatgatgtgggatctttcaagtggccgctgcgttacacctttg
atgggtcatacctcatgcgtatggacattggctttcagtggtgaaggttcactccttgct
tctggatctgctgattgcacggtaaaattatgggacgtaactgcaagtacaaagttgcca
aaagctgaagaaaaaagtggaagtgctagcagactgaggtcattgaagactttaccaacc
aagtgtacgcctgtctactccttgcggttttctcgaaggaatcttttgtttgcagccggg
gtcctttcaaaaactgtataa
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