Rosa chinensis (China rose): 112174014
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Entry
112174014 CDS
T06020
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00040
Pentose and glucuronate interconversions
rcn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112174014
Enzymes [BR:
rcn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112174014
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112174014
NCBI-ProteinID:
XP_024167466
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All DBs
Position
6:48617274..48621496
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AA seq
448 aa
AA seq
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MRLASSKATMRFYMTPLLLLLALLVSVAASIENDKPLQSRSVGLEEPKSSINSSMSTERS
NDDWNEHAVDNPEEIASLVDTTIRNSTARRNLGFFSCATGNPIDDCWRCDPQWQRHRKRL
ANCGIGFGRNAVGGRDGRYYVVNDPGHDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITL
KQELIMNSFKTIDARGVNVHIAYGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHY
GWRTMADGDGISIFGASHIWVDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLG
HSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTIN
SQGNRYLAPTNRFAKEVTHRVETTGRWRHWNWRSEGDLLLNGAFFVQSGAGAAASYARAS
SLGAKSSSMIGSITAGAGVLNCRSGRQC
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgagattagctagctcgaaagccacaatgcggttctatatgactccactgctgcttctt
ttggccttgctcgtaagcgtagcggcttcaatagagaatgacaagcctttacagtcaagg
tccgtgggactagaggagccaaaaagctccatcaactcgtcaatgtcgacagaaaggtcc
aacgatgactggaatgagcacgcagtagataatccggaggagatcgcgtccttggttgat
acgaccattcgtaacagtactgcgagaagaaacttgggatttttctcatgcgcaacaggg
aatcccattgatgactgctggagatgtgacccacaatggcagcgccaccgcaagaggcta
gccaattgcggcattgggttcgggcgcaatgccgtaggcggccgtgacggaaggtattac
gttgtaaatgaccccggtcatgatgatccggtgaaccccaggcccggtaccctccgtcac
gctgtcatccaggacaggcctttgtggattgtgttcaagcgtgatatggtgatcacattg
aagcaggagcttataatgaacagcttcaagaccattgacgctcgtggagtcaatgtccac
attgcttatggaggttgcattactattcaatacgttactaatgtgatcatccatggtcta
catatccatgactgcaagcctaccggcaatgccatggtccggagctcaccgagtcattat
gggtggaggaccatggctgatggggatggtatatccattttcggagccagccacatttgg
gtcgaccacaactcgctctcgaattgcgccgatggcctcattgatgctatcatgggttct
actgccattaccatttctaacaactacttcactcaccataatgaggttatgttgttgggg
cacagtgattcctacacaagggacaagcaaatgcaagtgaccattgcctacaatcatttt
ggtgagggactcatccaaagaatgccaagatgtagacatgggtatttccatgtggtgaac
aatgactacactcactgggaaatgtatgccattggtggaagtgctgatcccaccattaac
agccagggcaacagatatctcgcccctaccaaccgttttgccaaagaggtgacacataga
gttgagaccacaggcagatggaggcactggaactggagatcagaaggagacctactcctt
aatggagcgtttttcgtccaatccggagctggtgctgcagccagttatgccagagcttca
agcttaggggcaaagtcatcttccatgattggcagcattactgctggtgctggtgttctt
aattgccggtctggtcgtcaatgttaa
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