Rosa chinensis (China rose): 112175420
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Entry
112175420 CDS
T06020
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112175420
03015 mRNA surveillance pathway
112175420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112175420
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112175420
5.6.2.5 RNA 5'-3' helicase
112175420
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112175420
mRNA cycle factors
Common to processing body (P body) and stress granule
112175420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
112175420
NCBI-ProteinID:
XP_024168863
LinkDB
All DBs
Position
7:complement(25292236..25303832)
Genome browser
AA seq
1278 aa
AA seq
DB search
MESQPNNLFDTASQPDTATDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLSDPA
DRDRDRGGGGGGGGSDHQSDASPVSAAPGSATKARAGGSGSSGGNNNQVVDALASGMSVL
NFEDTGDDDSYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVN
HLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNA
LKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLE
DLEKPGVDDEPQPVAVKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLN
KKRVAYFIFPKEDNEIRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQ
GVPADVNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNTL
PRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV
CAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKL
QQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDE
STQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIR
LQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEI
SASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQL
YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPK
VLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFFGGGPGVVPSD
SYGSIPPSGQSADRRSGRGRGSYLPPGPPNGTHKPGVHPAGYPMPRAPLAPFHGGPLSQP
YAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGSAGAPIGSHLQHQQGTQQNVGNLGSNFN
FPALENPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMAGMSQEFLGDDFKSQGSHV
PYNVADFSTQASQSGYAVDYVTQGAQGGFPGNFINQNSQAGYSRFGTGNDFMSQDYMAHG
TQGLFTQVGYNDPSQDDGSQNHYGVGNANALQSQGYMNSLYSQPFTHYNTQPMNLQAPQQ
QPPQQGQSSQNQKIHYNG
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgcagccgaacaacctcttcgacacggcgtcgcagccggacacggccaccgac
gcctacacttttctcgaattcaacacccagggcgaggacttcgactacccggagtttcgc
gacccgattcgctccccggtggcctggcccacgccgtccgattccttatcggaccctgcc
gaccgcgaccgcgaccgcggcggaggaggtggtggtggtggctccgaccaccagtctgat
gcgtcgcctgtttcggctgccccgggcagcgccacgaaggcccgggccggtggctcgggc
agtagcggcgggaataataatcaggtggttgacgccctagcgtctgggatgagtgtgctg
aactttgaggacactggggatgatgatagctatgagtttggaaagggggattttactgag
catgcgtgccggtactgcggcgtgtcgaacccggcgtgcgttgtgaggtgtaacgtgccg
tcgtgccggaaatggttttgtaattccagggggaacacgtccggctctcatattgtgaat
cacctggttcgtgcaaaacacaaggaagtctgtcttcataaagatagcccattaggagaa
acaatccttgagtgctacaactgtggatgccgcaatgtattccttcttggatttatttca
gccaagacagagagtgttgtcgttcttctctgtagggaaccctgcttaagtgttaatgca
ttgaaggatatgaactgggacctgagccagtggtgtcctttgattgatgataggtgtttc
ttgcagtggcttgttaaggtcccctccgaacaggagcagctgagggcacgccagattagt
gctcaacaaataaacaaggtagaagaactctggaagtcaaatcctgatgcttcccttgaa
gatcttgagaagcctggtgtggatgacgaaccccaacctgtggccgtaaagtatgaggat
gcgtaccagtatcaaaatgtgtttgcaccacttatcaagcttgaagctgactatgataaa
atgatgaaagaatctcaaagtaaggacaatctcaccattaggtgggatattggtcttaac
aagaagcgtgtcgcttattttatttttccaaaggaggacaatgagattcgtcttgtacct
ggtgatgagctgcggcttcgttattctggggatgcagctcatccagcatggcagtctgtg
ggacatgtgatcaagttaactgcacaagaggaggttgcgcttgaacttcgtgctagtcag
ggagttccagctgatgtgaaccatggcttcagcgttgatttcgtgtggaaaagtacaagt
tttgatcgtatgcagggagccatgaaagcttttgcagtggatgagacaagtgttagtggg
tatatttaccatcacttgttaggccatgaagtagaggttcagatggtccgtaatacactg
cctcgtcgttttggtgcacctggtctgccagaactcaatgcatctcaggtttttgctgtg
aaaagtgtccttcagaagcctataagtttgattcaaggtccacctggcacaggaaaaact
gtcacttctgcagcaattgtgtatcacatggctaaacaagggcagggacaggtcttggtt
tgcgctcctagtaatgtggctgtagaccaactagctgaaaaaataagtgcaactgggctg
aaggtcgttagactttgtgcaaaatcaagggaagctgtcagctctcctgttgagcattta
acccttcactatcaggttcgtcatcttgacacatcagaaaagagtgaacttcacaagtta
cagcaattgaaggatgagcaaggcgaattgtcaagtagtgatgagaaaaagtacaaagcg
ctgaagcgggcaactgagagagagatttctcagagtgctgatgtcatttgttgcacatgt
gttggtgctggagatcctcgattggcgaattttaggttccgtcaggtacttattgatgag
tctactcaggcaacagagcctgaatgccttattcctttggtactgggggcaaagcaggtt
gttttggttggtgatcactgccagcttggtccagtcattatgtgcaagaaagcagctcgt
gctgggcttgcccagtctctttttgaacgcctcgttttacttggtgtgaaaccaattagg
ttgcaggtccaatacagaatgcatccagccttgtcagaatttccttccaacagcttctat
gagggaacactccaaaatggcgtcaccatcaatgaaaggcaatcaacaggaattgatttt
ccatggccagttcccaatcgtcccatgttcttttatgttcagatggggcaagaggagata
agtgctagcggaacatcttacctgaacagaactgaagctgctaatgttgaaaagattgtc
acaacattcttaaggagtggtgtagtccctagtcagattggggtgataacaccatatgag
ggacagcgagcatatattgtgaactatatgtcgagaaatggtgctctcaggcagcaactt
tataaggaaatagaggttgcaagtgtagattcatttcaaggaagggaaaaagattatatc
atcctgtcatgtgtgaggagtaatgagcatcagggcattggattccttaatgaccctcgg
aggctcaatgttgccctaacacgtgctcggtatggtattgttattctggggaaccctaaa
gttctaagtaaacagcccttgtggaatagcttgttgacacactacaaggaacatgagtgc
ttggtcgaaggtcctctaaataacttgaagcagagtatggttcaatttccaaagcccaaa
aagatctacaatgatcggcgtctgttctttggtggtggtcctggagttgtcccaagtgat
agttatgggtctattcccccatccggtcagagtgctgatagaagaagtggtcgtggtagg
ggctcttacctaccccctggtccaccgaatggtacccacaagcctggggtacatcctgct
ggatatccaatgcctagggcaccacttgcaccatttcatggtggtcccctttctcaaccc
tatgctattccaactcgtggagctgtgcatggaccagtaggagctgttcctcatgtccct
caacctggaagtcgaggttttggagctggacgtggcagtgctggtgctcctattggcagt
catctccaacaccagcaaggcacacagcagaatgtaggaaatctggggtctaacttcaac
tttcctgctctggaaaatcctaatagtcagccatctgtgggcggtccattatctcaacct
ggatttgtcaataatatgccagttcaagggccaagccaaacatttcgtgatggattttcc
atggcgggcatgtctcaggagttcttgggtgatgactttaaaagtcagggatctcatgtt
ccttataacgttgctgacttttccactcaggcttctcaaagtggatatgctgttgattat
gttacacaaggagcacaaggaggatttccaggcaattttataaaccagaattctcaagca
gggtactctcgatttggtacagggaatgacttcatgtctcaggactacatggctcatggt
acacaaggtctatttacccaggtgggctacaatgacccatcacaggatgatggatcgcag
aaccactatggagtggggaatgctaatgcacttcagtctcagggatatatgaattctctg
tactcccaaccttttacccactacaacacacagccaatgaacttgcaggccccacaacag
cagccgcctcagcagggtcagagctcccaaaatcagaagattcactacaatggttaa
DBGET
integrated database retrieval system
