| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts 1 homolog
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| KO |
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| Organism |
rcn Rosa chinensis (China rose)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:rcn00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112175420
03015 mRNA surveillance pathway
112175420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:rcn03019]
112175420
Enzymes [BR:rcn01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112175420
5.6.2.5 RNA 5'-3' helicase
112175420
Messenger RNA biogenesis [BR:rcn03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112175420
mRNA cycle factors
Common to processing body (P body) and stress granule
112175420
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
7:complement(25292236..25303832)
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| AA seq |
1278 aa
MESQPNNLFDTASQPDTATDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLSDPA
DRDRDRGGGGGGGGSDHQSDASPVSAAPGSATKARAGGSGSSGGNNNQVVDALASGMSVL
NFEDTGDDDSYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVN
HLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNA
LKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDASLE
DLEKPGVDDEPQPVAVKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLN
KKRVAYFIFPKEDNEIRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQ
GVPADVNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNTL
PRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV
CAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKL
QQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDE
STQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIR
LQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEI
SASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQL
YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPK
VLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFFGGGPGVVPSD
SYGSIPPSGQSADRRSGRGRGSYLPPGPPNGTHKPGVHPAGYPMPRAPLAPFHGGPLSQP
YAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGSAGAPIGSHLQHQQGTQQNVGNLGSNFN
FPALENPNSQPSVGGPLSQPGFVNNMPVQGPSQTFRDGFSMAGMSQEFLGDDFKSQGSHV
PYNVADFSTQASQSGYAVDYVTQGAQGGFPGNFINQNSQAGYSRFGTGNDFMSQDYMAHG
TQGLFTQVGYNDPSQDDGSQNHYGVGNANALQSQGYMNSLYSQPFTHYNTQPMNLQAPQQ
QPPQQGQSSQNQKIHYNG |
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| NT seq |
3837 nt +upstreamnt +downstreamnt
atggaatcgcagccgaacaacctcttcgacacggcgtcgcagccggacacggccaccgac
gcctacacttttctcgaattcaacacccagggcgaggacttcgactacccggagtttcgc
gacccgattcgctccccggtggcctggcccacgccgtccgattccttatcggaccctgcc
gaccgcgaccgcgaccgcggcggaggaggtggtggtggtggctccgaccaccagtctgat
gcgtcgcctgtttcggctgccccgggcagcgccacgaaggcccgggccggtggctcgggc
agtagcggcgggaataataatcaggtggttgacgccctagcgtctgggatgagtgtgctg
aactttgaggacactggggatgatgatagctatgagtttggaaagggggattttactgag
catgcgtgccggtactgcggcgtgtcgaacccggcgtgcgttgtgaggtgtaacgtgccg
tcgtgccggaaatggttttgtaattccagggggaacacgtccggctctcatattgtgaat
cacctggttcgtgcaaaacacaaggaagtctgtcttcataaagatagcccattaggagaa
acaatccttgagtgctacaactgtggatgccgcaatgtattccttcttggatttatttca
gccaagacagagagtgttgtcgttcttctctgtagggaaccctgcttaagtgttaatgca
ttgaaggatatgaactgggacctgagccagtggtgtcctttgattgatgataggtgtttc
ttgcagtggcttgttaaggtcccctccgaacaggagcagctgagggcacgccagattagt
gctcaacaaataaacaaggtagaagaactctggaagtcaaatcctgatgcttcccttgaa
gatcttgagaagcctggtgtggatgacgaaccccaacctgtggccgtaaagtatgaggat
gcgtaccagtatcaaaatgtgtttgcaccacttatcaagcttgaagctgactatgataaa
atgatgaaagaatctcaaagtaaggacaatctcaccattaggtgggatattggtcttaac
aagaagcgtgtcgcttattttatttttccaaaggaggacaatgagattcgtcttgtacct
ggtgatgagctgcggcttcgttattctggggatgcagctcatccagcatggcagtctgtg
ggacatgtgatcaagttaactgcacaagaggaggttgcgcttgaacttcgtgctagtcag
ggagttccagctgatgtgaaccatggcttcagcgttgatttcgtgtggaaaagtacaagt
tttgatcgtatgcagggagccatgaaagcttttgcagtggatgagacaagtgttagtggg
tatatttaccatcacttgttaggccatgaagtagaggttcagatggtccgtaatacactg
cctcgtcgttttggtgcacctggtctgccagaactcaatgcatctcaggtttttgctgtg
aaaagtgtccttcagaagcctataagtttgattcaaggtccacctggcacaggaaaaact
gtcacttctgcagcaattgtgtatcacatggctaaacaagggcagggacaggtcttggtt
tgcgctcctagtaatgtggctgtagaccaactagctgaaaaaataagtgcaactgggctg
aaggtcgttagactttgtgcaaaatcaagggaagctgtcagctctcctgttgagcattta
acccttcactatcaggttcgtcatcttgacacatcagaaaagagtgaacttcacaagtta
cagcaattgaaggatgagcaaggcgaattgtcaagtagtgatgagaaaaagtacaaagcg
ctgaagcgggcaactgagagagagatttctcagagtgctgatgtcatttgttgcacatgt
gttggtgctggagatcctcgattggcgaattttaggttccgtcaggtacttattgatgag
tctactcaggcaacagagcctgaatgccttattcctttggtactgggggcaaagcaggtt
gttttggttggtgatcactgccagcttggtccagtcattatgtgcaagaaagcagctcgt
gctgggcttgcccagtctctttttgaacgcctcgttttacttggtgtgaaaccaattagg
ttgcaggtccaatacagaatgcatccagccttgtcagaatttccttccaacagcttctat
gagggaacactccaaaatggcgtcaccatcaatgaaaggcaatcaacaggaattgatttt
ccatggccagttcccaatcgtcccatgttcttttatgttcagatggggcaagaggagata
agtgctagcggaacatcttacctgaacagaactgaagctgctaatgttgaaaagattgtc
acaacattcttaaggagtggtgtagtccctagtcagattggggtgataacaccatatgag
ggacagcgagcatatattgtgaactatatgtcgagaaatggtgctctcaggcagcaactt
tataaggaaatagaggttgcaagtgtagattcatttcaaggaagggaaaaagattatatc
atcctgtcatgtgtgaggagtaatgagcatcagggcattggattccttaatgaccctcgg
aggctcaatgttgccctaacacgtgctcggtatggtattgttattctggggaaccctaaa
gttctaagtaaacagcccttgtggaatagcttgttgacacactacaaggaacatgagtgc
ttggtcgaaggtcctctaaataacttgaagcagagtatggttcaatttccaaagcccaaa
aagatctacaatgatcggcgtctgttctttggtggtggtcctggagttgtcccaagtgat
agttatgggtctattcccccatccggtcagagtgctgatagaagaagtggtcgtggtagg
ggctcttacctaccccctggtccaccgaatggtacccacaagcctggggtacatcctgct
ggatatccaatgcctagggcaccacttgcaccatttcatggtggtcccctttctcaaccc
tatgctattccaactcgtggagctgtgcatggaccagtaggagctgttcctcatgtccct
caacctggaagtcgaggttttggagctggacgtggcagtgctggtgctcctattggcagt
catctccaacaccagcaaggcacacagcagaatgtaggaaatctggggtctaacttcaac
tttcctgctctggaaaatcctaatagtcagccatctgtgggcggtccattatctcaacct
ggatttgtcaataatatgccagttcaagggccaagccaaacatttcgtgatggattttcc
atggcgggcatgtctcaggagttcttgggtgatgactttaaaagtcagggatctcatgtt
ccttataacgttgctgacttttccactcaggcttctcaaagtggatatgctgttgattat
gttacacaaggagcacaaggaggatttccaggcaattttataaaccagaattctcaagca
gggtactctcgatttggtacagggaatgacttcatgtctcaggactacatggctcatggt
acacaaggtctatttacccaggtgggctacaatgacccatcacaggatgatggatcgcag
aaccactatggagtggggaatgctaatgcacttcagtctcagggatatatgaattctctg
tactcccaaccttttacccactacaacacacagccaatgaacttgcaggccccacaacag
cagccgcctcagcagggtcagagctcccaaaatcagaagattcactacaatggttaa |
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