Rosa chinensis (China rose): 112175827
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Entry
112175827 CDS
T06020
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112175827
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112175827
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
112175827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
Helicase_PWI
DEXQc_Suv3
T2SSE
Motif
Other DBs
NCBI-GeneID:
112175827
NCBI-ProteinID:
XP_024169344
LinkDB
All DBs
Position
7:complement(4021354..4039476)
Genome browser
AA seq
2095 aa
AA seq
DB search
MLVQLPRLTSSLREPFDVDQAYLQRKLILQNHTKPRQSSSSVDESELARKIVHRWEEASY
ELRQAYKQFIGAVVELIDGEVQSEEFREVALVVYRLFGRPEEEGSVETNFTGKKQEVQML
LGHTVSDVNMRKVVSLAQRLCGMQSSDHGITLVSERPVSGSHDDAEFGANLVFHPPARFL
VDVSLDDAESFCEETAGPSSYYEGSYGHSGLSGGHSATDGRSIDLTWLQDACDQITKSTT
QLSRDELAMAICRVLDSDKPGDEIAGDLLDLVGDGAFETVQDLISHRKELVDAIHHGLLV
MKSDKSSLTSQPRMPSYGTQVTVQTESERQIDKLRRKEEKRNRRGTEYGTDSDLAAVNFS
SLLQASEKKNIFDDLSGLGEGIAVNALPQGTQRKHHKGYEEVLIPPTPGAQMKPGEKLIE
ISELDEFAQAAFRGYKSLNRIQSRIYHTVYYTNENILVCAPTGAGKTNIAMISILHEIGQ
HFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNMTVRELTGDMQLSKNELEETQ
MIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQS
MIRIVGLSATLPNYLEVAQFLRVNPEAGLFYFDSSYRPVPLAQQYIGISETNFSAKTELL
NEICYKKVVESLRQGHQAMVFVHSRKDTAKTAQKLVELARKFEGLELFKNDQHPQFSLIQ
REVVKSRNKDLVELFEFGIGIHNAGMLRSDRGLTERLFSDGLLKVLVCTATLAWGVNLPA
HTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLL
TSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYGIAWEEV
MADPSLSLKQRSLIADAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNE
MLKRHMNETEVIDMVAHSSEFENIVIREEEQNELEMLVRKLCPVEVRGGPSNKHGKISVL
IQVYISRGSIDTFSLVSDAQYISASLARIMRALFEICLRKGWSEMSLFMLEYCKAVDRQV
WPYQHPFRQFDREISAQILRNLEERGADLDRLYDMEEKEIGKLVNYGPGGRLVKQYLGYF
PWIQLAATVSPITRTVLKVDLHIKPDFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTL
TKRMAKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYTISFHNLTLPEAHTSHTE
LLDLKPLPVTSLGNTAYEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAEL
AMLRLFNTQPDMKVIYIAPLKAIVRERMNDWRKRLVSQLGKKMVEMTGDYTPDLMAILSA
DIIISTPEKWDGISRNWHSRTYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTE
REVRFVGLSTALANAGDLADWLGVGETGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM
NKPSYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQYAASDEHPRQFLCILEEELQMVLY
QVADSNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVI
IKGTEFYDGKTKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPF
PVESSLREQLHNHINAEIVSGTICHKEDALHYLTWTYLFRRLMFNPAYYGLDNTDAESLS
SYLSRLVQNTLEDLEDSGCIKMSEDSVEPMMLGSIASQYYLSYLTVSMFGSNIGSDTSLE
VFLHILSAASEYDELPVRHNEENYNEALSERVRYKVDKDRLDDPHVKANLLFQAHFSQLE
LPITDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSVTCMHLLQMVMQGLWFDEDSSLW
MLPCMNVELAESLGKRGIFHIQQLLELPKATLQNMIGNFPASKFFQDLQLFPRIEVKLKI
LPKDGGKSCSLNIRLVKTNFRKYKSRAFTPRFPKVKNEAWWLVLGNTSTLELYALKRVSF
SDHLVTNMELPSDSTTLQGMKLILISDCYLGFEQEHSISELEALKDGSNQSRIIS
NT seq
6288 nt
NT seq
+upstream
nt +downstream
nt
atgctggttcagcttccgcgattgactagctctctgagggagcccttcgacgtcgaccag
gcctatttgcagcgcaagctcatccttcaaaaccacaccaagcctcgccaatcatcgagc
tcagttgatgagtcggagcttgcgagaaagatagttcatagatgggaggaagcttcgtat
gagctgcggcaagcttacaagcagtttattggagctgtggtggagttgatagatggagaa
gttcaatccgaggagtttcgtgaggtggcactcgttgtttaccggctttttggcagaccg
gaggaggaaggcagtgttgaaacaaattttaccggaaaaaagcaggaagtgcaaatgctt
ttggggcacacagtttcagatgttaacatgcggaaagttgtgtctctagctcagagactt
tgtgggatgcagtctagtgatcatgggattacacttgtttcagaaaggcctgtaagtgga
tctcatgacgatgcagaatttggtgccaaccttgtttttcatcctccggctcggttcttg
gtagatgtttctttggatgatgcggagtcattttgtgaggaaaccgctggaccttcttct
tattatgaaggatcatatggtcacagtggcttgagtggcggtcattctgctactgatggg
cgcagcatcgatctgacttggctacaagatgcatgtgatcagataacaaaaagtactaca
cagctttctcgagatgaactggctatggccatttgtcgggtgcttgattctgacaaacct
ggtgacgagatagcaggtgacttgttggaccttgtgggggatggtgcatttgaaactgtt
caagacctcatatcacatcgaaaggaacttgttgatgcgatccatcatgggttactagta
atgaaatctgacaaatcgtctttgacctctcaacctcgcatgccgagttatggcacacag
gttactgttcaaacagaatctgaacggcagattgataagcttcggcgcaaagaggaaaag
cgaaatagacgaggaacagaatatggcactgatagtgatctggctgctgtaaatttttct
tctctactacaagcaagtgagaaaaaaaatatttttgatgatctatcgggccttggtgaa
gggatagcagttaatgctcttccgcaaggaacccagaggaagcaccacaaggggtatgag
gaggtcctaattcctccaacaccaggagcacaaatgaaacctggagaaaagctgattgag
atctcggagttagatgagtttgctcaagctgcttttcgtggatacaaatctttgaaccgc
attcagagccgcatatatcatactgtgtactacacaaatgagaatatactagtttgtgct
ccaacaggagctggcaaaacaaacatagctatgatttccattctacatgagattggacag
cacttcaaagatggttacctgcacaaagacgagttcaaaatagtttatgttgcacctatg
aaggcgttagctgcagaagtcacatcaacttttagccatcggttatctccattgaatatg
actgtgagagaacttactggagacatgcaactttctaagaatgaacttgaagaaactcag
atgatagtaacaacacctgagaaatgggatgtcattactcgcaagagcagtgacatgtca
ctttcaatgctggtgaagcttctaataattgatgaagttcatcttttgaatgatgataga
ggcccggtaattgaggcactagttgctcggactttacgccaggtggagtcttcacagtca
atgatacgcattgtgggactttccgccactctacccaactatttggaggttgcacagttt
ctgagagtgaatccagaggcaggactcttctactttgattctagctatcgtccagtgccc
cttgcacaacagtatattggtattagtgagacaaacttttcagccaaaactgaattgttg
aatgagatatgctacaagaaggttgtggagtcactaaggcaaggtcatcaggcaatggta
tttgtccattctcgaaaggacacagcaaaaacggctcagaagctggttgaacttgctcgc
aaatttgaaggactggagctctttaagaatgatcagcacccacaattttcattgatccag
agggaagttgtaaaatccagaaacaaagatcttgttgaactttttgaatttggaattgga
attcataatgctgggatgttacgttctgatagaggtctgactgagcgccttttctctgat
ggactattgaaggtacttgtttgtacagcaactttggcgtggggtgtaaatctaccagct
cacactgttgtgataaaggggacccaattatatgatccaaaggctggtgggtggcgagac
ctgggaatgcttgatgttatgcagatatttggacgagctgggagacctcaattcgataaa
agtggtgaaggtattataatcacgtctcatgacaagctggcctactatctgcggttgctg
acgagtcaacttcctattgaaagtcagttcatcagttccttgaaggacaatttaaatgca
gaggtggcacttggaactgtcaccaatgtcaaggaagcttgtgcatggcttggatataca
tacctttttataaggatgaggctcaaccctttggcatatggtatcgcgtgggaggaggtt
atggcagatccttccttgagtttaaagcagagatctctcatagcagatgctgcgcgtgcc
cttgacaaagcaaaaatgatgcggtttgacgagaaaagtggcaatttttattgtacagag
cttggtcgcatagcaagccacttttatattcaatactctagtgttgaaacctacaatgaa
atgttgaaacgtcacatgaatgagactgaggtaattgacatggtagcccactcctcagaa
tttgaaaatattgttattcgagaagaggaacaaaatgagcttgagatgttggtgcgaaaa
ttgtgtccagtagaagttaggggtggtccttcaaataaacatggaaagatttccgttctc
attcaggtgtacatatctagaggctcaattgataccttttctttggtttctgatgctcaa
tatataagtgcaagcttggcacgtattatgcgggccttatttgagatttgtttgcgaaaa
ggctggagtgagatgtcattgttcatgttggaatattgcaaggcagtggaccgccaagtt
tggccctatcaacatcctttcagacaatttgacagggagatttcagcacaaatactgcga
aatcttgaggaacgaggtgctgatcttgatcgcctatatgatatggaggaaaaagagatt
gggaaactggtcaattatggacctggaggaaggttggttaagcaatatttgggatatttt
ccatggatccagttagcagcaactgtaagtccaattaccagaactgttttaaaggtggat
ttgcatattaaaccagactttatatggaaagatcgttttcacggcaccgcccagcgttgg
tggattctagttgaggattctgagaatgatcatatctaccactcggagctattcactcta
acaaaacggatggctaaaggggaaccccagaagctctcgttcactgtgccaatatttgag
ccacatccgccacagtattatatacgtgctgtttctgattcttggttgcatgcagaggca
ttctacaccatttctttccataatctaacactaccagaggcccatacttcacatacagaa
ctgctagatttaaagcctctccctgtgacatctcttggaaacactgcttatgaagcattg
tacaaattctcgcactttaatccaatacaaacacagactttccatgtgctgtatcacaca
gacaataatgtattactgggagctcctactggaagtggaaaaactatttctgccgagctt
gctatgcttcgtctcttcaacacccagcctgatatgaaggtcatttacatagcacctttg
aaggctattgttcgagaaagaatgaatgattggaggaagcgccttgtctctcagctaggg
aagaaaatggttgaaatgacaggagattatactccagatttgatggccatcttgtcagca
gatatcataatatcaactcctgaaaaatgggatggtatcagtcgtaattggcatagccga
acctatgttaaaaaggttgggcttatgattttggatgagattcacttgttgggagctgac
cgtgggcctatactcgaggttattgtgtcaaggatgagatacatatcctcacagacagag
cgtgaagtacggtttgtaggcctttctacagctctggcaaatgcaggagatttagctgat
tggttgggtgttggagaaactggactcttcaatttcaaaccaagtgtcagacctgtacct
cttgaagttcatatccagggatatccaggaaagttctattgtccaaggatgaatagcatg
aacaaaccatcatatgctgctatatgcacccattcacctacaaaaccggttctaattttt
gtttcctcacgtcgccagacaaggcttactgcattggacctcattcagtatgcagcttca
gatgagcatccaaggcagtttctttgtatactggaagaagaactgcagatggttctttat
caggttgctgatagtaacctgaggcacaccttgcaatttggcattggattacaccatgct
ggtctgaatgacaaagatagatccctggttgaggaactttttgcaaacaacaagattcag
gtattggtttgtactagcacgttggcatggggtgtaaaccttccagcgcatctggttatt
attaagggaacagaattttatgatgggaaaacaaaaagatacgtcgacttcccaatcaca
gatatcttgcaaatgatgggtcgtgcaggtcgcccacaatttgatcaacacgggaaagca
gtcattcttgttcatgaacccaaaaagagcttctataaaaagtttttatatgaaccattt
cctgtcgagagtagtctgagggaacagctgcataatcacattaatgcggagatagtttct
ggcacaatttgccataaagaggatgcattgcattatcttacgtggacatatttattccgc
agactgatgtttaatccggcttactatggcttggacaatactgacgccgaaagtctcagt
tcttatttgtctaggttagtgcagaacacattggaggatctggaagacagtggatgcatc
aagatgagtgaagacagtgtggagccaatgatgctgggttcgatagcatcccagtattac
cttagctacttgactgtatcgatgtttggttcaaacattggctcagatacctctcttgaa
gtattcttgcatatcctatctgctgcttctgaatatgatgagcttcctgttcgccataac
gaggaaaattacaatgaggcattgtctgagagagttcgatataaagtggataaggatcgc
ctagatgatccacatgtcaaagcaaatctgctatttcaggcacatttctcgcagttagaa
ttaccaattactgactatgtcacagacttgaagtcagttttggatcaaagtatacggatt
atccaggccatgatagatatatgtgccaacagtgggtggctttcaagttcagttacttgc
atgcatcttttgcagatggtcatgcagggcttatggtttgatgaggattcttccttatgg
atgttgccttgcatgaatgttgaacttgcggaatcactcggcaaacgaggaatcttccat
atacagcagctattggaacttcccaaggcaactttgcagaacatgattggaaacttccct
gcttcaaaattctttcaggatctgcagctctttccacgcatcgaagtcaagttaaaaatt
ctaccgaaagatggtggaaaatcctgctctttaaacatcagattggtgaagaccaatttc
aggaaatataaatcaagagcattcactccacgttttcctaaggtgaaaaatgaagcatgg
tggttggtccttgggaacacctctacgttggaactatatgctctgaagagagtatctttc
tctgatcacttggttactaacatggagttgccatccgattcaaccactctccaggggatg
aaactgattttaatatcagattgttatctggggttcgaacaagagcattcaatttcagaa
cttgaagccttgaaggatggcagtaaccagagtaggattatcagttga
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integrated database retrieval system
