Rosa chinensis (China rose): 112176213
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Entry
112176213 CDS
T06020
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcn04131
]
112176213
Membrane trafficking [BR:
rcn04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
112176213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
112176213
NCBI-ProteinID:
XP_024169804
LinkDB
All DBs
Position
1:42077268..42085924
Genome browser
AA seq
1666 aa
AA seq
DB search
MASSAFELEDQTDEDFFDKLIDDDDIDFSGYANSSVGKAELDVVKDISKLSVSDVGTGGR
TSSQVNGELGQKGGVVLEPSDLQKESLTGGESESSALVAKGEEGVVDDTVSSSVVSVDGG
LGRGDGVNGQLGHGDGVVLASLDRHQDPMVSEASKSSVPENRDEAVEDKASNEGGELEGK
GEDSPVDNTVRKSAVSEGTGVKVVQWSSFNSDPSGGSGFGSYSDFFSEVGGNSEDPFANL
GNTDQSGVKSIVSNGVLESSVSAFGNSSYVQHQEDPFANLGNTVQFGAESVVTNGVLENA
VSGFDTFSYGQQQEDPFADLGNADQFGAKSAVSNVVLENSGSGLGASIYGKHQEDPFANL
GNTDQSGAESNMSNGILENSVSGLGTSSYGQHQEGQFYGAPENQNLDGQQLNSNQNWENL
YPGWRYDPNTEQWYPLEGYDVNSNTNAEVNNNANAQESFNVNSQSADTEVFSAQKADAPY
LQQAVQAVSQSVVEASETSTVSNWNQHSYGNTEYPAHMVFDPQYPGWYYDTNIQEWRQLE
PSVATIYHDQQNTSTWHAENVAKSETIGFTENQEWRQLQPFTPSFDQSTTSMVHNQQYNN
TNVDNHGSQSPIIQQSVLNWDGSMTAYDQQNTSLWHAQKVAKSDTVGFTEKQAYMDRQFS
TEHAFNSVNQQTGFNPSGSIALHQDPSQGNDISSATDGFERFNYANFSQPQDQAKEPNQA
MHFSPANFGSQKPVQFFQQPLQTGTQFSHDAREGRSSAGRPAHALVTFGFGGKLILMKNN
SSFHANQTYGSQGSVEGVINVLNLMDVVTEKSDAANFGTDGCDYFSALCQQSFPGPLVGG
NVGNKELNKWIDDKIANCETSHLDFKKGDHLRLLFSLLKISWQFYGKLRSPFGTDQRLKD
IDNPESALAKLFASAKRSNEYGALTRCMHNLPSEAQIQATALEVQKLLVSGRKDEALQCA
QEGQLWGPALVIASQLGDQFYCDTVKHMAVNQLIAGSPLRTLCLLIARQPADVFSDATTN
SSFPSFTNLSQRHEQVGANYMLDDWEENLAILTANRTKDDELVIIHLGDSLWKDRGQITA
AHICYLVAEANLEQYSNSSRLCLIGADHWKFPRTYASPEAIQRTELYEYSKVVGNPQFLL
LPFQPYKLIYAHMLAEVGKLADSLKYCQAILKSLKTARAPEVDTWRELVSSLEERIRAHQ
QGGYSINLAPTKLMGKLRTFIDSTAHRVVGGLPPPIPSTAPGFPQLNEHSHQLPPPIPST
APGFPQLNEHAHQLPPPIPSTAPGFAQLNEHAHQPGNRNVPNSQSTMVMSSLMPSASMEP
ISERTSESNQLNMPNRSISEPDFGKSPSKVDSSKKVNSKTQQKPSASSGSRFSFGSQIFQ
KTLGLVIKSRPDKQAKLGEANKFYYDEKLKRWVEEGAEPPAEEAALPPPPPTTAAIQNRM
QDYNMNDALKTTSFHAVGGPEIKSPASSESSGAPPVPPSSNQFSARGRMGVRSRYVDTFN
KGGATPGNLFQPPSLPAAKPGGGSNPKFFIPSPVTSYQETVQTTEGSTQESFVTSNNPPK
SVDTFSAPPTSTPSSMTMQRFPSMDNIVQKRAGELTNGSSFVPPESRRVASWSGSLSEAS
NPSVRSEIKPTALGMSPLSYMPSFSPSMQSERSSGSLGDDLHEVEL
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atggccagttctgcgtttgagttggaggatcagacggatgaggatttctttgacaaattg
atcgatgatgatgacattgatttttctgggtatgctaatagttctgtaggaaaagctgag
cttgatgtggttaaagatatttcgaaattgagtgtttcggatgtaggtaccggtgggaga
actagttctcaggttaatggtgagttgggtcagaaaggcggggttgtgttggagccgtcg
gatctgcagaaggagtctttgactggtggagagagtgagtctagtgcattggtggccaaa
ggggaggaaggtgtggtggatgatacagtgagttcgagtgttgtatcagttgatggtgga
ttgggtcgcggggatggggttaatggtcaattggggcacggcgatggggttgtgttagct
tcgttggatcgacaccaggatcctatggtcagtgaagcgagcaagtcatcagtaccggaa
aatagagatgaggcagtggaggataaagctagtaatgagggtggtgaattggagggtaaa
ggggaggacagtcctgtagataatacagtcagaaagagtgcggtgtcagagggaacaggt
gttaaagtagttcaatggagttcgtttaactcagatccttctggtggtagtggatttggg
tcatactcagatttttttagtgaagttggaggtaactcagaagacccatttgcgaatttg
ggtaacacagaccaatctggggtcaaatctattgtgtctaatggtgttctggaaagctca
gtttctgctttcggtaattctagctatgtgcaacatcaagaagacccatttgcaaatttg
ggtaatacagtccaatttggggccgaatccgttgtgactaatggtgttctggaaaatgct
gtttctggttttgatacttttagctatgggcagcaacaagaagacccatttgcagatttg
ggtaatgcagaccaatttggggccaaatctgctgtgagtaatgttgttctggaaaactcg
ggttctggtttgggtgcttctatctatgggaagcatcaagaagatccatttgcgaatttg
ggtaatacagaccagtctggggctgaatctaatatgagtaatggtattttggagaactca
gtttctggtttgggtacttctagctatgggcagcatcaagaaggtcaattctatggggct
cctgaaaatcaaaacttagacgggcaacaattaaatagtaatcagaattgggaaaatctt
tatcccggatggaggtacgatccaaatactgagcagtggtatccgttggagggttatgat
gtgaattcaaacacaaatgcagaggtgaacaataatgcaaatgctcaggagagttttaat
gtaaattctcagtctgcagatactgaagttttttcagcccagaaagcagatgctccttat
ctgcagcaagcagtgcaggctgtttctcaaagcgttgttgaggcatctgaaactagcaca
gtttctaactggaaccaacattcttatgggaatacagaataccctgcacacatggttttt
gatccccagtaccccggttggtactatgacacaaatatccaagaatggaggcagttggaa
ccttctgtagctacaatctaccatgatcagcaaaatacgagtacatggcatgctgagaat
gttgccaagagtgaaactattggttttactgagaatcaggaatggagacagttgcagcct
ttcactccatcttttgatcagtcaacaacaagtatggttcataatcagcaatataacaat
acaaatgttgacaaccatggatcacagagtccaatcattcaacaaagtgttttaaactgg
gatggatctatgaccgcctatgatcagcaaaatacgagtttgtggcatgctcagaaagtt
gccaagagtgatactgttggttttactgagaaacaggcatacatggaccggcaattttca
actgagcatgcatttaattctgtgaatcaacaaacagggttcaatccttcgggatcaatt
gctcttcatcaagacccaagtcagggcaatgatattagtagtgcgactgatggctttgaa
aggtttaattatgctaacttttctcagcctcaggatcaagccaaggagccaaaccaagcg
atgcatttctcacctgctaactttggtagtcagaagccagtacaatttttccagcagcca
ctccagactggaactcagttttcacacgacgccagagaggggaggtcatctgctggacga
cctgcacatgctctggttacttttggatttggtgggaaacttatactaatgaaaaataat
agttcttttcatgcaaaccagacatatggaagccagggctctgtagaaggtgtcattaat
gttctcaatctgatggatgttgtcacggagaaaagtgacgctgcaaactttggaactgat
ggttgtgattatttcagcgccttgtgccagcaatcttttcctggacctttagttggtggg
aatgtcggaaataaggaattaaacaaatggattgatgacaaaattgcaaattgtgaaact
tctcacttggatttcaagaaaggggaccatttgagattgcttttctctttactaaaaata
tcttggcaattttatggaaaacttcgatctccctttggtaccgatcaaagattgaaggac
attgataatccagaatcagctcttgctaaactttttgcatctgctaaaagaagtaacgag
tatggtgctcttacgcggtgcatgcataacttgccttctgaagcacaaattcaggctact
gctcttgaggtacaaaagcttcttgtctctggtaggaaggatgaggctttacaatgcgca
caagaaggtcaattgtggggaccagcacttgttattgcatcgcaacttggtgatcagttt
tattgtgatactgtgaagcatatggctgtaaaccagttaatagcaggatcaccattgcgg
acgttgtgcttgttaatcgccaggcagccagcagatgtgttttccgatgctactacaaat
agcagttttcctagtttcacaaatttatcacaacggcacgaacaggttggagctaattac
atgttagatgactgggaagagaatctagccatcttaactgcaaatagaacaaaagatgat
gagcttgttatcatccatcttggagattccttatggaaggataggggacagataactgct
gcacacatatgttatttagttgcagaagccaaccttgagcaatattcgaacagttcaaga
ctgtgtcttatcggtgctgatcattggaagtttccacgaacatacgccagtccagaggct
attcagaggacagagctgtatgaatactcaaaggttgttggaaatcctcagtttcttcta
ctaccttttcagccatataagcttatttatgcccacatgctggctgaagtaggaaaactt
gctgattctttgaaatattgtcaagcaattttgaagtctttgaaaactgctcgagcacct
gaggtggacacatggagagagttggtgtcatctctggaggagcggataagagcccaccag
cagggtggttatagcataaatttggctccaaccaagttgatgggtaaattgcgtacattc
attgatagtactgctcatcgtgttgttggggggctacctccacctataccatcaacagca
ccaggctttcctcagcttaatgaacattctcatcaactacctccacctataccatcaaca
gcaccaggcttccctcagcttaatgaacatgctcatcaactacctccacctataccatca
acagcaccgggctttgctcagcttaatgaacatgctcatcaaccaggaaatcgaaatgta
cctaacagtcaatcgacaatggttatgtcttcattaatgccttcagcatcaatggagcca
ataagtgaaaggacttctgagagcaaccaactgaatatgcctaacagaagcatttcagag
ccagactttgggaaaagcccgagtaaggtcgattcatccaagaaagtgaactctaaaacg
caacaaaagccatcagcatctagtgggtcacgtttcagttttgggtcacagatatttcaa
aagactctaggactggtcataaaatcccggccagataagcaggctaaattgggtgaagca
aataaattctactatgatgagaaactcaagcgatgggtcgaagaaggtgctgaacctcca
gccgaggaagcagccttaccaccacctccgccaacaactgcagctatccaaaatagaatg
caagattacaacatgaatgatgcactgaaaactactagctttcatgcagttggtgggcca
gaaatcaaaagcccagcatcttccgagagttcaggggcaccacccgttccacccagttca
aaccagttctctgcacgtgggcgtatgggtgttcgctcaaggtatgttgatacattcaac
aaaggcggtgcgaccccaggaaacttatttcagccaccatctcttccagctgctaaacca
gggggtggttccaatcccaagtttttcatcccctctccagtaacttcctatcaggaaaca
gttcaaacaactgaaggaagcacacaagaatcttttgtgaccagtaacaatcctccaaaa
tcagtagacacattctctgctccgccaacctcaacaccatcgtcaatgaccatgcaacgg
tttcctagcatggataacattgtacaaaagagagcaggagaattgacaaatggcagtagc
tttgttccacctgaatctcgtcgtgtggcatcatggagtggaagccttagtgaagcaagc
aatccttctgtaaggagtgaaataaaaccaacagcacttggtatgtccccattgtcatat
atgcctagtttttctccatcaatgcagtctgaaagaagcagtggtagtttgggtgatgac
cttcatgaagttgaactataa
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integrated database retrieval system
