KEGG   Rosa chinensis (China rose): 112176328
Entry
112176328         CDS       T06020                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03082  ATP-dependent chromatin remodeling
rcn03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112176328
   03083 Polycomb repressive complex
    112176328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rcn03036]
    112176328
Enzymes [BR:rcn01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112176328
Chromosome and associated proteins [BR:rcn03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     112176328
   HDAC complexes
    Sin3A-HDAC complex
     112176328
    BRAF-HDAC complex
     112176328
    REST complex
     112176328
    SHIP complex
     112176328
    MiDAC complex
     112176328
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     112176328
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112176328
  Chromatin remodeling factors
   NuRD complex
    112176328
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 112176328
NCBI-ProteinID: XP_024169961
LinkDB
Position
7:11198693..11202328
AA seq 466 aa
MDSSGASLPSGPDGTKRRVSYFYEPTVGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRME
INRPFPAAPSDIRKFHSDDYVDFLASVSPETLSDAVHARHLKRFNVGEDCPVFDGLFGFC
QASSGGSIGAAVKLNRRDCDIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRV
LYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGPGKNYALNVPLND
GMDDESFRSLFRPLIQKVMEMYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRYLRS
FNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDYTLHVDTCNM
ENLNSPKEMENIRNTLLEQLSRLPHAPSVPFQTTPPTTEVPEEAEERMDHRPKRRIWEGV
DYDSDPDDDDEKPWKYSNSAGLRGVKTEMRDVPDEMEEDEDHPPCC
NT seq 1401 nt   +upstreamnt  +downstreamnt
atggactcgagcggagcttcgctgccgtcaggccccgacggaacgaagcggcgcgtgagc
tacttctacgagcccaccgtcggcgactactactacggccaaggccacccgatgaagccc
caccgcatccgcatggcccacaacctgatcgtccactacggccttcaccgccgcatggag
atcaaccgccccttccccgccgccccctccgacatcagaaaattccactcggacgactac
gtcgacttcctcgcctccgtctcccccgaaaccctctccgacgccgtccacgcccgccac
ctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctcttcggcttctgc
caggcctcctccggtggctctattggagccgccgtcaagctgaaccggagggactgcgat
attgccatcaattgggccggtgggcttcaccatgccaagaaagctgaggcctcagggttt
tgttacgtgaacgacattgtgctcgggattcttgagctgctcaaggttcataggcgtgtt
ctttatgtagacattgatgttcaccacggagatggggttgaggaggcattttacactacc
gacagggtaatgactgtgtccttccataagtttggcgatttctttccagggactgggcat
atcaaggatgttggtgcagggcctgggaaaaattatgccttgaatgtcccgctgaatgat
ggtatggatgatgagagttttcgcagtctgtttaggcccctcatccaaaaggttatggag
atgtatcagccagatgcagttgttcttcagtgtggagcggattccctatctggtgatcgg
ttggggtgcttcaacttatctgtcaaaggtcatgccgattgtctccgctatcttcgatct
ttcaatgttcctttgatggttttgggcggtggaggatatacgatcaggaatgttgctcgt
tgctggtgctatgagacagcagttgctgttggggtggagccagagaataaattgccttac
aatgaatactacgagtattttggcccagattacactcttcatgttgacacatgcaacatg
gagaacctcaactcacccaaagaaatggagaacataaggaatacgctgctagagcaactt
tctagattacctcatgcaccaagtgtgcccttccagacaacaccgccaactacagaagtc
ccagaggaggcagaagagcgcatggaccacagaccaaagcgtcgtatttgggagggtgtt
gactatgattctgatcctgatgatgatgatgagaagccttggaagtactccaattctgct
ggtctgcgtggtgttaaaactgagatgagggatgttcctgatgagatggaagaagacgaa
gatcatcctccgtgttgttag

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