| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
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| KO |
| K14328 | regulator of nonsense transcripts 3 |
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| Organism |
rcn Rosa chinensis (China rose)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:rcn00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112176561
03015 mRNA surveillance pathway
112176561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:rcn03019]
112176561
Messenger RNA biogenesis [BR:rcn03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112176561
mRNA cycle factors
P-body specific factors
112176561
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
7:complement(52460293..52467514)
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| AA seq |
519 aa
MKDPSVRTKVLVRHLPPSLSQSDFFQQIDHLFGDRHNWFCFRPGKNSHKHQRYSRAYIEF
KRPEDVFEFAEFFDGHVFVNEKGTQFKSIVEYAPSQRVPKPSNKKDGREGTIYKDPDYLE
FLKHIAKPAEHLPSAEIQLERKEAEQAGAAKEAPIVTPLMEYVRQKRAIGSGTQISSVVR
KVRRRTGATSFSKRGSTSTKRVSEKKKYILKDAAKYTSRKDRSTFNLVPRREDQLASSSG
KDTMGNEIGSVSGIPVIADSGRTKILLKREIPPAPEGMPQHQASIGSSPVSAAPKQNQRR
DASGRFLRSILSHNEGRQRETSAEVQSQQKILGPNSDIKRVSRPSNTRLGLNNEPNSMSS
EGDRRRATVDKFTKKDVHGTTNVNEKQDKHTRNKDRPDRGVWTPLRRAESSHASDEHLSS
SASQRPQLLSDSVEVPHGEVKADTSYGSRTGEVITSTGGRSLTHVDNGPHQHFGRRGTAP
STKDAGSLNISEGKSSKRGAAVHGAPEKQVWVQKSSSGS |
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| NT seq |
1560 nt +upstreamnt +downstreamnt
atgaaggacccctcggtgagaacgaaggtgttagttcggcacctgcctccgtctctgtct
cagtccgatttctttcagcaaatcgaccacctcttcggtgaccgccacaactggttttgc
ttccgtcccggaaaaaatagccataagcatcagaggtattctcgagcctacattgagttt
aagcgacctgaagatgtttttgagtttgcggaattctttgacggtcatgtatttgttaat
gagaaagggactcagttcaagtctatagttgaatatgcaccttcacagcgtgttcccaag
ccaagtaacaagaaggatggtcgtgaagggactatatataaagatcctgattatttggag
ttcctgaaacatattgcaaagcctgctgagcatcttcctagtgcagaaatacagctggag
agaaaggaagctgaacaagctggtgctgcaaaagaagctcctattgttacacccctgatg
gagtatgttcgtcagaaacgagctattggaagtggaacccagatttcatcagttgttcgg
aaggtgagaagaagaactggggccacatcttttagcaaacgtggctcaacttctacaaaa
cgggtctctgagaagaaaaagtacatattaaaggatgcagctaaatatacaagtcgaaag
gacaggtcaactttcaatttggtgcccaggcgagaggatcagttggctagttcaagtgga
aaagatacgatgggaaatgaaattggttctgtttcgggaatccctgtgattgcagactct
ggaaggacaaaaatcctacttaagcgggaaatacctcctgctcctgaaggtatgccacaa
catcaggcatccataggaagttctcctgtttcagctgctccaaagcagaaccaaaggcgt
gatgctagtggaagatttctcagaagcatactttcacataatgagggacgccaaagagaa
acttcagctgaagttcagtctcagcagaaaatcctgggtccgaactcggacattaagcgt
gtgtcgcgaccctccaatacacggttagggttgaataatgaacctaattcaatgagctct
gaaggggacagaaggagggctacagtcgataaatttacgaagaaggacgtgcatggtaca
actaacgttaatgagaagcaagacaagcatacaagaaacaaggatagaccagatcgtggt
gtttggactcctcttcgtcgtgctgagagttcccatgctagtgatgagcacttatcatcc
tcagcttcacaacgacctcaactgctatctgattcagttgaagttccccatggagaagtg
aaagctgacacatcttatggaagcaggactggggaagttataacttccacaggtgggcgt
agtcttactcatgtagacaatggtccccatcaacattttggtcgccgtggaactgcccct
agtacgaaagatgctggctctctaaatataagtgaggggaagtcatctaaaagaggtgct
gctgttcatggtgcccctgagaaacaagtgtgggttcagaaatcatcttccgggtcatag |
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