Rosa chinensis (China rose): 112176873
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Entry
112176873 CDS
T06020
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112176873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112176873
03012 Translation factors [BR:
rcn03012
]
112176873
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112176873
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112176873
Translation factors [BR:
rcn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112176873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
ATPase
T2SSE
AAA_19
nSTAND3
NACHT
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
112176873
NCBI-ProteinID:
XP_024170744
LinkDB
All DBs
Position
7:complement(1572157..1580146)
Genome browser
AA seq
1225 aa
AA seq
DB search
MPYSAFFHRSIIIRTTSTAMSLKPRHHHFSLLRPPSLLLLGCFMNTNGHYHTHPVTGLLK
WSSSGCCRHADVTCLASSSSSRAAERTDWKQRRRSVAAVPAWYQQQQKQGYGRFAYQDES
GSEDSDREFGSGQSSRREMTGSTIDNIDEWRWKLTMLVRNKDEQEVVSRDRKDRRDFDHL
SELARGMGLYSHQYSKVVVFSKVPQPNYRPDLDDRRPQREVVLPFGLHKDVDAHLKAHLS
QKPISRGNLSHTSMSRSNSNGSIAKDGGLYEQEEPLIQNSVAMERILQQKSLRLLNKQQE
WQESIEGQKMLELRRSLPAYKEKDSLLKAISENQVIVVSGETGCGKTTQLPQYILESEIE
AGRGGVCSIICTQPRRISAMSVSERVAAERGENLGESVGYKVRLEGMKGRDTRLLFCTTG
ILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLSRRPELRLILMSATLNAEL
FSSYFYGAPMIHIPGFTYPVRAHFLENILEMTGYRLNQYNQIDDYGQDKTWKMQKQAQAF
KKRKSQIASTVEDALEAADFREYSPRTQESLSCWNPDSIGFNLIEHVLCHIVRKERPGAI
LVFMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMPSSEQRLIFDKPEDGVRKIVLA
TNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAGRVQPGE
CYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQSPEPLSVQNA
VDYLKIIGALDDNEDLTVLGRHLSMLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSMRDP
FMMPFDKKDLAESAKAQFSGRDSSDHLALIRAYDGWKNAERSQAGYEYCWRNFLSAQTLK
AIDSLRKQFFFLLKDAGLVDHNIENCNTLSYDEQLIRAIICAGLFPGICSVVNKEKSISL
KTMEDGQVLLYSNSVNASVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNISR
GGLDGHLKMLGGYLEFFMNPALANTYVSLKRELEELIHNKLIDPKLDMQSHINLLSALRL
LVSEDRCDGRFVFGRKMPVPSKKITKELGPGTLRVGDNGKSGGNNSKSQLQTLLVRAGHE
APTYKTKQLKNNQFRSTVIFNGLNFVGQPSNSKKQAEKEAAAEAVLWLKGDNHSSSTDID
HMSMLLNKSRKKIHKTTSFDSAKWS
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgccttactccgccttcttccaccgctctataataatccgcaccacctccaccgccatg
tccctcaaaccccgccaccaccacttctctctcctccggccgccgtcgctcctcctcctc
ggatgcttcatgaacaccaacggccactaccacactcaccccgtcaccggcctgctcaaa
tggagttcctccggctgctgccgtcacgctgacgtcacttgcctggcctcctcgtcctcg
tcgcgtgcggcggagaggacggattggaagcagcggcggaggagcgttgcggccgtgccg
gcgtggtaccagcagcagcagaagcaggggtatgggaggtttgcgtaccaggacgagtcg
ggtagtgaagattcggaccgggagttcgggtcgggtcagagctctcgccgggagatgact
ggttcgaccattgacaacatcgatgagtggagatggaagttaaccatgcttgttcgcaac
aaagatgagcaagaagtggtgtcgagggacaggaaggacaggcgtgattttgatcatctt
tcagaactggcaagagggatgggtttatatagccatcagtattcaaaggttgtagtcttt
agtaaagtcccgcagccaaattacagacctgatctggatgataggcgaccacaaagagag
gttgtcttaccttttggactgcataaagatgttgatgctcatctcaaagctcatctttct
caaaagccaatcagcagaggaaatttatcgcatacttcaatgtcaaggtcaaatagtaat
ggaagtatagctaaagacgggggactctacgagcaggaggagcccttgatacagaatagt
gttgccatggagagaattcttcagcagaaaagcttgcgattgctcaataagcaacaagaa
tggcaggaatccatcgaaggtcaaaagatgcttgaacttcgtagaagtctgcctgcatat
aaagagaaagattccttgttaaaagccatatccgaaaatcaggtcatagttgtctcaggt
gaaacaggttgtggtaaaactacacaacttcctcagtacattttagaatctgagattgaa
gctggtcgtggaggtgtctgtagtattatttgtactcagcctagacgaatatctgccatg
tctgtttctgaaagagttgctgcagaacgaggggagaatctgggggaatcagttggttac
aaagttaggctggaaggaatgaaagggagggacacacggcttcttttttgcaccacaggc
atactattgagaagattacttgtcgacagaaagttgagaggtgttacacatgtcattgtt
gatgagattcatgaacgtggaatgaatgaagattttcttcttatcgttctgaaagaactt
ctctctcgccgtcctgagttgagattgattttgatgagtgcaaccttaaatgctgagctt
ttctcctcgtacttttatggtgctccaatgatccatatacctggttttacatacccggtc
cgagcacattttctggagaatattctagaaatgactggatatcggttaaatcaatataat
caaattgatgattatggtcaagataagacgtggaaaatgcagaaacaagctcaagctttc
aaaaagaggaagagccaaattgcttctaccgttgaggatgcacttgaagctgctgacttt
agggagtacagtccaaggactcaggagtctctgtcctgttggaatccggactccattggt
tttaatctcattgagcatgtgctttgccacatagtcaggaaagaaaggcctggtgctatt
ttggtttttatgactggttgggatgacataaactccttgaaagatcaactccaatctcat
ccccttttaggagatcctagtagggtcctgctgcttgcctgtcatggttccatgcctagc
tctgaacagaggttgatatttgataaaccagaagatggagttaggaaaatcgttctggct
acaaacatggctgagaccagtatcactatcaatgatgtagtatttgtgattgattgtgga
aaggcgaaagaaacatcatatgatgcactcaataatactccctgtttgcttccatcctgg
atatcaaaggctgcttcccggcaaagaagaggaagagccggtcgtgttcaacccggcgag
tgttaccatctatatccccgatgtgtatatgatgcctttgctgattatcaattgcctgaa
cttttgaggacgcctctgcagtctctatgtttacaaatcaagagtctacaacttggaagt
atttctgagttcctttctaaggcactgcagtcaccggaacctttgtcggttcaaaatgct
gttgattatctgaagatcataggggctttagatgacaatgaagatctcacagtattaggt
cgccacctgtcaatgcttcctgttgagccaaaacttgggaaaatgctcatattaggggct
atcttcaactgtttagatccaataatgactattgttgcaggccttagtatgagagatcca
ttcatgatgccatttgacaagaaggatcttgcggaatcggcgaaagcacaattttctggc
cgtgatagcagcgatcatctggctcttatccgagcatatgatggttggaaaaatgctgaa
agatcgcaagctggttatgagtactgctggagaaattttctttctgcacaaactctaaaa
gccattgactctcttcggaagcagttcttcttcttgctcaaggatgctggtttggttgat
cacaacattgagaactgcaatacattgagctatgatgaacagcttatccgagcaatcatc
tgtgcaggattatttcctggaatatgttctgttgtgaacaaagagaagtcgatttcgttg
aaaacaatggaagatggacaagtacttctatactcgaattctgtcaatgcttcggtgcct
aaaattccatatccatggctagttttcaatgaaaaggtgaaagtgaattcagtattcctt
cgggattcaaccggcgtatctgattcggtgctccttttgtttggaggcaacatttccagg
ggtggactggatgggcacctgaagatgttgggaggatacttggagtttttcatgaatcct
gcattagcaaatacatatgttagcttaaagagggaacttgaggaactgattcataataag
cttatagatcccaaattggatatgcaatctcatattaacctcctatcagccctaagatta
ctggtctctgaagacagatgtgatggtagatttgtctttggtcgcaagatgccagtaccc
tcaaagaagataacgaaagagttaggtccaggcaccttgagggttggcgataatggtaaa
agcgggggtaacaattccaaaagtcagctgcaaacattgcttgtcagagcaggacatgaa
gctcccacctacaaaacaaaacaactgaaaaacaaccagtttcggtccacagtgatattc
aatgggttgaattttgtagggcagccttccaatagtaagaaacaagcagagaaggaagca
gctgctgaagctgtgctctggttaaagggcgataaccattcatcttccacagatattgac
catatgtcaatgcttctaaacaagagtagaaagaaaatccataaaacgacctcatttgat
agcgctaagtggagttga
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integrated database retrieval system
