Rosa chinensis (China rose): 112177209
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Entry
112177209 CDS
T06020
Name
(RefSeq) SWI/SNF complex subunit SWI3A
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112177209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112177209
03036 Chromosome and associated proteins [BR:
rcn03036
]
112177209
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112177209
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112177209
PBAF complex
112177209
GBAF(ncBAF) complex
112177209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
112177209
NCBI-ProteinID:
XP_024171238
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All DBs
Position
7:8871757..8874913
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AA seq
560 aa
AA seq
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MELAPHDPGSKQLRPDEPELDLYTIPSHSSWFLWDEIHETERIALKEFFDGRSISRTPKV
YKEYRDFIINKYREDPARKLTFTEIRKSLVGDVTLLHKVFSFLEKWGLINFGASSGDNDG
FGTSGEAGTTVKVEEGVPNAVRVGANPSDSKPLSATPTVVDSGGGSASRITLPPLASYSN
VFGDLKKESLVCGNCGGHCDSGHYKYNKGDFLLCTKCFENGNYGENKLKENFKYNEPVEK
SSNMGVEWTESETLLLLDSVAKHGDDWDRVAQNVKTKTKVDCIAKLIDLPFGEVVLGSGH
RKGNHSGFSGNLSGSKQGQLSSSECQETIKTKSQSHEQTNDSEQNGDTANQGPPLKKQRV
ASLSDASSSLITQVSALSTLVGPHITASAAEAAVNALCEETSCSKEIFNAEDDCVTNGLQ
SPAINCETERVLQLEDSEMKERPTESAGQDVFIKKDDIPPTLQIRAAIATGLGAAAARAK
LLADQEDREIEHLLATIIGTQMKKLHCKIKTVEELDLLMEKEYAEMEEEEDSLLEERIDI
IQQTLDSGVPRWRDHPPVKS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggaacttgcaccgcacgacccgggttcaaagcagctccgacccgacgaaccagagctc
gacctctacaccatcccaagccactctagctggtttttgtgggatgagattcatgaaact
gagagaattgctttgaaggagttctttgatgggaggtcgatatcaagaacaccaaaggtg
tacaaagaatatagggactttattattaacaagtatagagaagacccagctagaaaactc
acattcaccgagattcgaaagtcacttgtgggtgatgttactttgctgcacaaggtcttt
agtttcttggaaaaatgggggttgattaattttggggcaagttcgggtgacaatgacggt
tttggtacctcgggtgaggccgggactacggttaaggttgaggaaggagtcccaaatgcg
gtccgagtgggtgcaaatccaagtgattctaagcccctttcggccacacctacggtagtg
gacagtgggggtggaagtgcgagtagaattacattgcctccattggcatcatactcgaat
gtttttggtgatttgaagaaagagagcttggtttgtggcaattgtggcggacattgtgat
tctggacactacaagtataacaagggtgattttctactttgcacaaagtgttttgaaaat
ggaaactacggggagaacaaattgaaggaaaatttcaagtacaacgagccagttgaaaag
agtagtaatatgggagttgagtggactgaatcagaaactttacttcttttagattcagtt
gcaaagcatggagatgattgggatcgtgttgctcaaaatgttaagaccaagaccaaagtt
gattgtattgctaagcttattgatttgccttttggggaggttgtgttgggttctggtcac
agaaaaggtaaccatagtggctttagtggcaacttgagcggttcaaaacaaggtcagtta
tcttcatctgagtgtcaagagactatcaaaaccaagagtcagagccatgagcagacaaat
gacagtgagcagaatggagatactgcaaaccaaggtccccctttgaaaaaacaacgcgtc
gcttccctttcggatgctagtagttcacttattacacaggtatctgccttgtcaaccttg
gttggtccgcatattacagcttctgcagctgaggctgctgttaatgcactttgtgaggaa
acctcatgttcaaaggagatatttaatgctgaagacgattgtgttactaatggcttgcag
tctcccgctataaattgtgagacagagagagtccttcaacttgaagattcagagatgaag
gaaaggccaactgaatcagcgggtcaggatgtgtttataaaaaaagatgacatacctcca
actttgcaaattagagctgccatcgcaacaggtcttggagcagctgctgctcgtgccaaa
ttactggctgatcaggaggatagagagattgaacatcttttggcaaccataatagggaca
cagatgaagaagttgcactgcaaaatcaagaccgtcgaagaactggatctgcttatggag
aaggaatacgcagaaatggaagaagaagaagattctctgctagaagagcgaattgacatc
atacaacagacactcgactctggcgtacctagatggagggatcatcctcctgtaaaatct
tga
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