Rosa chinensis (China rose): 112177415
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Entry
112177415 CDS
T06020
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112177415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112177415
03041 Spliceosome [BR:
rcn03041
]
112177415
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112177415
Spliceosome [BR:
rcn03041
]
Complex B
Other components
Prp19-related factors
112177415
Complex C
112177415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
ARM_TT21_C
CKAP2_C
Motif
Other DBs
NCBI-GeneID:
112177415
NCBI-ProteinID:
XP_040367263
LinkDB
All DBs
Position
7:12244061..12246796
Genome browser
AA seq
911 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPYSHKLWWRYLIARSDAPFKKRRTIYERALKALPGSY
KLWYAYLRERLELVRNFPINHSEYETLNNTFERALVTMHKMPRIWILYLQSLTEQRLVTR
TRRSFDRALCALPVQQHDRIWELYLVFVSQKGIPIQTSLRVYRRYLLYDPTHVEDFITFL
IESELRQDAAERLASVLNDDQFRSIKGKTKHRLWLELCDSLTKNATAVSGLNVDAIIRGG
IKKFTDEVGRLWTSLPDYYIKRGLFEKARDVFEEGMQTVVTVRDFSVIFDAYAQFEESML
AIKMEALGSDEEEEKGENGRMEDEGSEEEEEDVRTNVDLSVAELRRKILHGFWLYDANDV
DLRLARLDHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTQAVKTVDP
MQAVGKPHTLWVAFAKLYEIHGDIANARVIFDKAVQVNYKTVDNLASLWCEWAEMELQHK
NFTRALELMRRATAEPSVEVKRRVAADGNPPVQMRLHKSLRLWTFYVDLEESLGTLESTR
AVYERILDLRIATPQIIINYALLLEEHKYFEDAFKVYEKGTQIFKYPHVKDIWIIYLSKF
VKRYGKNKLERARLLFEDAVKAAPADAKKSLYLQFAKLEEDYGLAKRAMKVYDEATKAVP
NHEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAKLEKSLGEIDR
ARGVYVFASQFSDPRSDAEFWNKGHEFEVQHGNEDTFREMLRIKRSISASYSQTHFILPK
YMMQKDQRLSIDEAKDKLKQAGVPEDEMAALERQLAPAISDTPSKDSNRKVGFVSAGIES
QIDGGIKVAANHEDIELPEESDSEDEANVEIAQKEVPAAVFGDLANKRKDSEDNEGADLG
ALERIKRLKKV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctatctctcaagaactctacccctcccaagacgacctcctctacgaagaagagctt
ctccgaaacccttacagccacaagctctggtggcgctaccttatcgcccgatctgacgcg
cccttcaagaagcgccgcaccatctacgagcgcgccctcaaggcccttcccggaagctac
aagctttggtacgcctacctccgcgagcgtctagagctcgtccgcaactttccgatcaac
cactccgagtacgaaaccctaaacaacaccttcgaaagggcgttggtgacaatgcataag
atgccgcggatttggattctgtatttacagagcctgacggagcagagattggtcacgagg
actcgccggagtttcgatcgggcgctgtgtgctctgccggtgcagcagcacgaccggatt
tgggagctgtatttggtgttcgtgagccagaaggggatccctatccagacatcgcttcgg
gtctaccggaggtacttgctttatgacccgactcatgttgaggactttattacgtttttg
atagagtctgagctgcggcaagatgcggcggagaggctggcctcggtgcttaatgatgat
cagtttaggtcgattaagggaaagactaagcataggttgtggttggagttgtgtgattcg
cttactaagaatgccacggcggtttcggggttgaatgtggatgctatcattagaggtggg
attaagaagtttacggatgaggtgggaaggctgtggacgtcgttgccggattattatatt
aagaggggtttgtttgagaaggctagggatgtgtttgaggaggggatgcagactgtggtg
actgtgagggattttagtgtgattttcgatgcgtatgcgcagtttgaagagagtatgctt
gcgattaagatggaggctttggggagtgatgaggaggaggagaaaggagagaatgggaga
atggaagatgagggcagtgaagaggaggaggaagatgtccgaaccaatgtagacttgtct
gtggctgagcttcggaggaaaatactccatgggttttggctatatgatgcgaatgatgtt
gatttgaggttggctcgattggaccatcttatggatagaagacctgaactggctaatagt
gttcttttgagacaaaatccgcataatgtagagcaatggcaccggagagtgaagctgttt
gaggggaatcctacaaagcagatacttacttacacacaggctgtgaagacagtggatcca
atgcaagcagtggggaagcctcatacgttgtgggttgcttttgctaagctgtatgaaata
catggagatattgcaaatgcaagagtaatttttgataaggccgtccaggtgaactacaag
acagtggataatctggctagtctgtggtgtgagtgggcagaaatggaattgcagcataag
aattttacacgcgccctggaactgatgagaagagctacagcagagccgtctgttgaggtt
aaacgaagagttgctgctgatgggaatccaccagttcagatgaggctccataaatccttg
aggctttggaccttttatgtggacttggaggagagcctgggtacactagagtctactcgg
gcagtgtatgagaggatattggatttgagaatagccacacctcaaataataatcaactat
gcattgcttctggaagaacataaatactttgaagatgcatttaaagtctatgaaaagggt
actcaaatattcaagtacccgcatgtcaaagacatatggattatttatctctctaaattt
gtaaaaagatatgggaagaataagctggaacgtgcaagactgctctttgaggatgctgtt
aaagcggctcctgcagatgcgaagaaatcattgtatcttcaatttgcaaagttggaggag
gattatggtctagcaaagcgggctatgaaggtctatgatgaagcaactaaggctgttcca
aaccatgaaaagttgagcatgtatgaaatctacattgcacgtgcagctgagatatttggg
gtccccaaaacaagggagatatatgagcaagcaatagaatctggactccctgacaaagat
gtgaagacaatgtgtctaaagtatgctaagctcgagaagagcttgggcgaaattgatcgt
gctcggggagtttacgtatttgcatctcagttttcagatccacgatcggatgcagaattc
tggaacaaagggcacgagtttgaggtgcaacacgggaatgaagatacgtttagagaaatg
cttcgaatcaaacggagtatttctgcaagttatagccagacacactttattctacccaag
tatatgatgcaaaaggatcagaggttgagcattgacgaggcaaaagacaaattgaaacag
gctggagtccccgaagatgaaatggctgctcttgagaggcagttggctcctgcgatcagc
gatacaccctctaaagacagcaacagaaaagtgggctttgtgagtgctggaatagaatca
cagattgatggagggataaaagttgctgcaaatcacgaagacattgaactaccagaagaa
agtgattctgaagatgaggcaaatgttgaaatagcacaaaaggaggtcccagctgctgtt
tttggagatttggctaacaaaagaaaggattctgaagataatgagggcgcagaccttggt
gctctggagagaataaagaggctgaaaaaagtgtga
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