Rosa chinensis (China rose): 112177804
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Entry
112177804 CDS
T06020
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112177804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112177804
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
112177804
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Casein_kappa
Motif
Other DBs
NCBI-GeneID:
112177804
NCBI-ProteinID:
XP_024171828
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All DBs
Position
1:complement(43713184..43718029)
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AA seq
688 aa
AA seq
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MSRGKDGTVLLIDVGPSMHKALPEIEKLCSMLVEKKLIYSKSDEVGVVLFGTEGTENELT
REVGGYDHITVLQNIKVVDEHLIRAVEQLPRGTHNGDFLDAVIVGMDMLIKKYGETNKGK
KRLCLFTNAHFPTKAPQDGTKEDQVITIARHMNTQGMRLESIVIRGGLTGEAKKSIMDEN
DHLLDIFSKRTCAKLVHVETPTSLLGALKTRKVSPVTIFRGDLELSPKMKIKVWVYKKTS
EDKFPTLKKYSDKAAPTDKFATHEVKVDFEYKSAEDLSKVVPPEQRIKGYRYGPQVIPIS
SAEWDAVKFKPEKSVKLLGFSDAQNIMRHYYMKDVNVFIPEPGNTRAILAVSALARAMKD
KNKVAIVRCVWRQGQASVIVGXLTPNVSDNDNIPDSFYFNVLPFSEDVREFQFPSFNNFP
AAWQPSEQQQEAADDFVRMFDLAPSGKQEVLPPDLTPNPVLERFFRHLELKSRDPDAAVP
PIDETLRKISEPDKELIAENKSVIDAFRSRFELKENPKLKKSSRRLLKEKPSVSDEREDP
MDISDQTNSNEHTSGIKVTKIGDSAPVQDFEAMMSRRDSPEWVGKAIKDMKNKIHDLVED
SHEGDNYPKALECLVALRKGCILEQEPNQFNDFLRSLCKFCQEKYLSSFCEFLATKELTL
IPKTEAIDSEVTDAEARSFLVKSEPKLE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgaggcaaggatggtacggttttgttgattgatgttggcccgtcgatgcataaa
gctcttccggagatagagaagctttgctctatgctggtggagaagaagctcatttacagc
aaaagtgatgaagtcggagttgttttgttcggcacagaaggcactgaaaatgagctaaca
agggaagtcggtggatatgatcatataacggttttacaaaatatcaaagttgttgatgaa
catcttattcgggctgtggaacaactcccacgaggaactcataacggtgattttcttgat
gctgtaattgttgggatggatatgctgataaagaaatatggagaaacaaacaaaggaaaa
aaacgtctttgtctatttacgaatgcacacttccccactaaagctccacaagatggaact
aaagaagatcaagttatcaccattgccagacatatgaatacgcaaggtatgagattggaa
agtatagtcataagaggagggcttactggggaagctaagaaaagtataatggatgagaat
gatcatctattggatatattctcaaagagaacatgtgcaaagttggtacatgttgagact
ccaacctcattgctaggtgctcttaaaactcgaaaagtttctcctgttacaatattcagg
ggtgatcttgagctgagccccaaaatgaagattaaggtatgggtttacaagaaaacatcc
gaagacaagtttcccactctgaagaaatattctgataaagccgctccaacagataaattt
gcgacacatgaagtcaaggtggattttgagtataagagtgctgaagatctgagtaaagtt
gtacctccagaacagaggattaaaggttatcgttatggacctcaagtaattcccatatca
tctgctgaatgggatgctgtcaagttcaaaccagaaaaaagtgtgaaacttctgggattt
tctgatgctcaaaatataatgcgacactattacatgaaagatgtcaacgttttcattcct
gaaccgggtaatacaagggccattcttgctgtttctgccttggcacgagcaatgaaagat
aagaataaggtggcaattgtgcgctgtgtttggagacaaggacaagcaagtgttattgtg
gggnccttgacacctaatgtgtctgacaatgataatattcctgattcgttttacttcaac
gtactccctttttctgaagatgttcgagaatttcaattcccatctttcaataatttccca
gcagcatggcaaccaagtgaacagcagcaagaggctgctgatgattttgtgaggatgttt
gatcttgcaccatctgggaaacaggaggttctgccgcctgacctaacaccaaatcctgtt
cttgagcggttttttcgtcatcttgagttaaagtcaagggacccagatgcagctgtacct
ccaattgatgaaactctcaggaagattagtgaaccagataaggagctgattgctgaaaac
aagtctgttattgatgcattccgtagtcgttttgaactcaaagagaacccaaagctgaag
aaatcaagtaggcgactgttgaaagaaaaaccatctgtgtccgatgaaagagaggatcct
atggacatttctgatcaaaccaactccaacgaacatacatctggaattaaggttacaaaa
attggggattctgctcctgtccaggattttgaagctatgatgtcccgtagagatagccca
gaatgggttgggaaagccatcaaggatatgaagaacaaaatacacgacttagtagaggac
tctcacgaaggggataactatcctaaagcactggaatgtttagttgccctccgcaagggt
tgtatcctagagcaagaaccaaaccagttcaatgattttctgcggtctctatgtaaattc
tgccaggagaagtacctgagcagtttctgtgaatttcttgcaaccaaagaactcaccttg
attcccaagacagaagctatagacagtgaagtaacagatgctgaagctagaagttttctg
gtcaaatcagagccaaagttggaatga
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