Rosa chinensis (China rose): 112178093
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Entry
112178093 CDS
T06020
Name
(RefSeq) protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112178093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112178093
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112178093
Complex C
U5 SnRNP specific factors
112178093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_19
Suf
HAT_Syf1_CNRKL1_N
TPR_8
TPR_CcmH_CycH
TPR_2
ubiquitin
TPR_16
ARM_TT21_C
TPR_1
Motif
Other DBs
NCBI-GeneID:
112178093
NCBI-ProteinID:
XP_024172070
LinkDB
All DBs
Position
7:complement(50283221..50286705)
Genome browser
AA seq
984 aa
AA seq
DB search
MVFIATPNHKTLTLNLNPKTTTLLTLKHQIQQTSLMPISHQRLFLSQSLHLSTQNDAALL
SDLGIGPLSTLTLHTPFLGGTQPHRYSFLTAKPPPNYVAGLGRGATGFTTRSDIGPARPT
PAPIVRENPDDEDKGYDENQKFDEFEGNDMGLFADAEYDEDDDAADAVYAAVDERMDSRR
KEMREAKKKEMEEKSNAKNPKKTPEELKRKLRSVSVKEWESLPEMGDYSWKNRKRRKFES
FVPVPDTLFEKARLERQHVASVDPMSTDLTALGEGKGTVMKLKLDRLSDSVSGLTSVDPK
GYLSGLLSMNMNVSTSSDVSDIKKTRQLYRSVRESKPKDPCGWIAAARLEEMVGKLKEAR
EIIKKGCHMCPKNEDVWLEACRLVSPSEAKVVVAMGVKQIPNSVDLWMRAVDLEHDKSNK
KKVLRKALDQSNENLRCVRLWKAVMDLCHEDDKDMKILLHRAVEVCPLEVQFWVALARSE
SYEAAKMILNNARVHLPKERAIWVEAAKLEEVRGNVSKVGKIIERGIELLQEQGLVNFRE
TWMKEAEKVERAGHVAVCQAIIQNSVGVGVEEEDRKRTWLADAEEYMKSGSIETARAIYA
HALTVFLTKKSVWRKAAMLEKSHGTKESLDALLRRAVKYLPQVEFFWLMAAKENWLAGDV
NAARMILEEASKSLPNSEEIMLAAFKLEFENHEQERARMILDKTRARVDSGRVWMKSAIL
QRELGNSDEEKKFLEEGLKRFPSFFKLWLMLGQLEERLNHFQKAKAAYESGLKHCSNCIP
LWLSLANLEENRNGLSKARAVLTTARKKNSRNPELWIAAVRAELRHGNKREADTLMAKAL
QEQECPNSGILWAASIGMVPGPQRKTKSLDAYKYCGKEDPHVNAAVAKLFWHERKIDRAR
AKLNLAVTHAPDIGDFWTLYYKFELQNGTEETRKDVLERCVAAQPKHGEKWQTISKTVEN
WHQPTEAILKKAVKKDAARAQNQQ
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggttttcatcgcaaccccaaaccacaaaaccctaaccctaaatctaaaccccaagacc
accaccctcctcaccttaaagcaccaaatccaacaaacctcccttatgcccatctctcac
cagcgcctattcctctcccaaagcctccacttatccacccaaaacgacgccgcactcctc
tccgacctcggcatcggacccctctccaccctaaccctccacacccccttcctcggcggc
actcagccccaccgctactccttcctcacagccaagcccccgcccaactacgtcgccggc
ctcggccgcggcgccaccggcttcaccacccgctccgacatcggccccgcccgccccact
cccgctccaattgttcgggaaaatccggacgacgaggacaagggttacgacgagaaccag
aagttcgacgagtttgaaggaaatgacatggggcttttcgccgacgcggagtacgacgag
gacgacgacgcggctgatgccgtttacgcagcggttgatgagaggatggactcgaggagg
aaggagatgagagaagctaagaagaaggagatggaggaaaagtcgaacgctaagaatcca
aagaagaccccggaggagttgaagaggaagctgcgttccgtgtccgtcaaggaatgggag
agcttaccagaaatgggggattattcgtggaagaacaggaagaggaggaagttcgagagc
tttgttccggtgccggatacccttttcgagaaggccaggctggagaggcagcatgttgcg
tctgtagacccaatgagtacagatttgactgcattgggcgagggaaaggggacagtgatg
aagctgaaattggataggctttcggattcggtttcgggtctcaccagtgtggatccaaag
gggtatcttagtggtcttttgagtatgaatatgaatgttagtactagttctgatgtttcg
gatataaagaagactagacagttgtataggagtgtaagagagtcgaagcctaaggacccg
tgtggttggattgcggctgcgaggttggaggagatggtggggaagttgaaggaagccagg
gagatcattaagaaaggctgtcatatgtgtccaaagaatgaggatgtgtggctagaggca
tgcaggcttgtcagccccagcgaagccaaggttgttgttgctatgggagtgaagcagata
ccgaattcggtggacttgtggatgagggctgtggatttggagcatgataagtcgaataag
aagaaagtgttgcggaaagcgctggatcaaagtaatgaaaatcttcgttgtgttaggctg
tggaaggcagtgatggatctctgtcacgaagatgacaaggatatgaaaattttgcttcat
agggccgtggaggtttgtccgttggaggttcaattttgggttgctcttgcgaggtcggaa
agttatgaggctgccaagatgattcttaataatgctagagtgcatcttccgaaagagcgc
gccatttgggttgaagcagccaagttggaagaagttagggggaatgtgtctaaggttggg
aagattattgaaaggggtatagagcttttgcaggaacaagggttggtgaatttcagagaa
acatggatgaaggaagctgaaaaggttgagcgtgctgggcatgtggcagtttgccaagca
atcattcaaaacagtgttggggttggtgttgaggaagaggataggaagaggacttggctt
gctgatgcagaggagtacatgaagagtggttccatcgaaactgccagagcaatttatgca
catgcacttactgttttcttaaccaagaagagtgtatggcgcaaggcagcaatgcttgaa
aagagccatgggaccaaggaatctcttgatgctttgcttcgtagagcagtgaagtaccta
ccacaggttgaattcttttggcttatggctgctaaggaaaactggcttgccggggatgtg
aatgctgcacgaatgatccttgaagaagcttctaaatcccttcccaattctgaagaaatt
atgcttgctgcatttaagttagagtttgaaaatcatgagcaagagagagctagaatgatt
cttgacaaaacccgagcaagggtagatagtggaagagtatggatgaaatcagcaattctt
cagagagaattagggaactctgatgaggagaagaagtttcttgaggaagggttgaagcgc
ttcccctcattctttaaattgtggttgatgcttggacagctagaggaacgcctcaatcat
tttcaaaaagccaaggcagcgtatgaatcgggtctcaagcactgctccaattgtataccg
ctctggctttctctagcaaatcttgaagagaatagaaatggtctgagtaaagctcgtgca
gttctgacaacagccaggaagaagaactctcgtaatcctgaactgtggattgctgctgtt
cgagctgaactaaggcatggtaataagagggaagctgataccttgatggcaaaggctttg
caggagcaggagtgtcccaatagtggtatcctgtgggcagcatctattgggatggtacca
ggtcctcaaaggaagaccaaaagtctagatgcctacaaatattgtggtaaggaagatccc
catgttaatgctgctgtggccaagttattttggcatgaaagaaagatagacagagctagg
gctaagctcaacctggcagttacacatgccccagatattggagatttctggactttatac
tacaagtttgaacttcagaatggaactgaggagacccggaaggacgtactggaaaggtgt
gttgctgcacaaccaaagcatggtgaaaaatggcaaactatttcaaagaccgtggagaac
tggcaccaaccaactgaagctatcttgaagaaagctgtgaagaaagatgcagccagagct
caaaatcaacagtag
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