Rosa chinensis (China rose): 112178558
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Entry
112178558 CDS
T06020
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112178558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112178558
03041 Spliceosome [BR:
rcn03041
]
112178558
03009 Ribosome biogenesis [BR:
rcn03009
]
112178558
03016 Transfer RNA biogenesis [BR:
rcn03016
]
112178558
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112178558
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112178558
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112178558
Complex C
U4/U6.U5 tri-SnRNP related factors
112178558
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
Helicases
112178558
Transfer RNA biogenesis [BR:
rcn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112178558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
112178558
NCBI-ProteinID:
XP_024172476
LinkDB
All DBs
Position
7:39064127..39070639
Genome browser
AA seq
991 aa
AA seq
DB search
MGSLKRKSEEDDSAAAPPKVAKSENKNTLEIVNNEQMLCVHDVSYPEGYVPPPPPPPSSS
EPAKKFPFTLDPFQSEAIKCIENGESVMVSAHTSAGKTVVASYAIALCLRHKQRVIYTAP
IKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWII
FDEVHYMRDLERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKVHRQPCHIVYTD
YRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQQALNALAPASDAAKKKENGKWQKGLV
IGKAAEETDIFKMVKMIIQRQYDPVILFSFSKRECELLAMQMAKLDLNGDSEKANIETIF
WSAMDMLSDDDKKLPQVTTMLPLLMRGIGVHHSGLIPILKEVIEILFQEGLIKCLFATET
FSIGLNMPAKTVVFTNVRKFDGNKFRWITSGEYIQMSGRAGRRGIDKRGICILMVDEKLE
PSTAKMMLKGNADSLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADRAIPNLEKQ
TKELEQERDSIIIEEEDSVRNYYNLVQQYKSLKQDLREIVISPKYCLPFLKPGRLVSIQC
TKSDEASASFSTEDHVTWGVILNFQRVKTVSEDDAVKRPEDSNYTVDVLTRCLVDTNGVA
KKTLKIVPLKELGEPVVVSISISQINSMSRLCMVIPNDLLSLQARENTLKKVLETLSRFG
EKIPLLDPEEDMKIQSSSYKKVARRIEALENLFDRHEIAKSPLIEQKLKVFHMKQELAAK
IKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVQLKGKVACEISSADELTLTEL
MFNGVFKDIKVEEMVSLLSCFVWREKLKDATKPREELDLLFLQLQETARRVAEVQLECKV
EIDIDSFVSSFRPDIMEAAYAWAKGSKFYEIMSVTGVFEGSLIRAIRRLEEVLQQLIHAA
NSIGETDLESKFEEAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgggatccctgaagagaaaatcggaggaagacgactctgcagcagctccacccaaagta
gccaagtcggagaacaagaacactcttgaaatcgtcaacaatgaacagatgctctgcgtg
cacgacgtgtcgtaccctgagggttacgttcctccgccgccgccgccgccttcttcttcc
gaacccgccaagaaattccccttcactctcgacccttttcagtccgaagccatcaaatgc
attgaaaatggggagtccgtcatggtgtctgctcacacatctgctggaaaaactgttgtt
gcgtcgtacgcgattgcgttgtgtttgcgtcataagcaacgtgtgatatacaccgcaccc
atcaaagctctcagcaaccaaaagtacagagagttcaaagaggagttttcggatgttggg
ttgatgactggagatgtaacaatcgaccccaacgcttcgtgcttggtgatgaccacggaa
atctggcggagcatgcagtacaaaggatcagaggtgacgcgagaggtggcgtggataatc
tttgatgaggtgcattacatgcgggatctcgagagaggtgtggtgtgggaagagagcatt
gttatggctccaaagaatgctcgctttgtcttcctctcagcaaccgtgcccaatgcaaag
gaatttgctgattggctcgcaaaggttcatcgacagccttgccacattgtctatacggat
tataggcccactcctcttcagcattatattttcccctccggaggggatggtctgtacttg
gtagttgatgaaaagggaaagtttcgtgaggacagctttcaacaagctcttaatgcgctt
gctcctgcctccgacgctgctaagaagaaggaaaatggcaagtggcagaagggtctggtc
atcggcaaggccgctgaagaaaccgatatcttcaagatggtgaaaatgataattcagcgt
cagtatgaccctgtcatacttttcagctttagcaaaagggaatgtgaattacttgcaatg
cagatggcaaagttggacctaaatggggacagtgagaaagcaaacatagaaaccatcttc
tggagtgctatggatatgctttcagacgatgataagaagttaccccaggttactactatg
ttaccccttttaatgcgtggaataggtgtgcatcattctggtttgattcccattctaaag
gaagtgattgagatattatttcaggaaggtcttatcaagtgtttatttgcaacagagacc
ttcagcataggactgaacatgcctgcgaaaactgttgtatttaccaatgtccggaaattt
gatggtaataagttcagatggataaccagtggtgagtatatacaaatgagtggtcgtgct
ggtcgccggggtattgataaacgtgggatatgcatacttatggtagatgagaagctagag
ccatctactgccaaaatgatgcttaaaggaaatgctgatagtttgaacagtgcctttcat
ttaagctacaacatgcttctgaatcaattgcgctctgaagatggtaatccagaaaattta
cttcgtaactcattctatcagttccaagctgatcgtgccattcccaatctggagaaacaa
acaaaggagcttgagcaagagagggattcaattataattgaagaagaagatagtgtaagg
aattattacaatctagtacagcaatacaagagtttaaagcaggatcttcgtgagattgtg
atttctccaaagtactgcttaccatttctgaaacctggtaggcttgtgtcaatccaatgc
accaagagtgatgaagcttccgcttctttttctaccgaggaccatgtcacatggggtgtt
atacttaattttcaacgagtgaaaactgtttctgaagatgatgcagttaagagacctgaa
gattcaaactacactgtggatgttttgactaggtgtctggtcgacacaaatggagttgca
aaaaaaacactaaaaattgttcctttgaaagaactgggagaacctgttgttgtttcgatt
tccatctctcagattaatagcatgagtcgactttgtatggtcataccaaatgatcttttg
tcattacaagctcgagaaaacacactgaagaaagttcttgaaactctttcaagatttgga
gagaagattcctcttttagatcctgaagaagacatgaagattcaaagtagttcgtacaaa
aaagtggctcgtaggattgaggctttagagaacctgtttgacaggcatgaaattgcaaaa
tcaccactaattgagcaaaagctcaaggtttttcacatgaagcaggaattggcagcgaag
atcaagtcaattaagaaaacaatgcgctcttcgactgcgttggcttttaaagatgaactt
aaggcacgaaaacgggttcttcggaggctaggatatgttactagcgatgatgttgtgcag
ttgaagggtaaggttgcttgtgaaatcagtagtgcagatgagttgaccctcacagagctc
atgttcaatggcgttttcaaggacataaaggtagaagagatggtatctcttctctcatgt
tttgtttggcgggaaaaactaaaagatgctacaaaaccaagggaagagcttgacctgctc
ttcttgcaattacaagaaactgctcggagggtggctgaagttcagcttgagtgcaaggtt
gaaattgacatcgatagctttgtgagttcatttcggcctgatattatggaggctgcatat
gcttgggcaaaagggtcaaaattttatgagataatgtcagttacaggggttttcgagggt
agcttaatcagggcaatcaggagactagaggaagttcttcagcaacttatacacgcagcc
aattctattggagaaactgatcttgaatcaaaatttgaggaggctgtttcaaaaatcaag
agagacattgtctttgcagcttccctatacttgtaa
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