KEGG   Rosa chinensis (China rose): 112178672
Entry
112178672         CDS       T06020                                 
Name
(RefSeq) autophagy-related protein 16
  KO
K17890  autophagy-related protein 16-1
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    112178672
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rcn04131]
    112178672
   03029 Mitochondrial biogenesis [BR:rcn03029]
    112178672
Membrane trafficking [BR:rcn04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    112178672
 Others
  Specific organelles associated proteins
   Auto phagosome
    112178672
Mitochondrial biogenesis [BR:rcn03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    112178672
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C ATG16 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SCAP WDR54 Beta-prop_HPS5 NBCH_WD40 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_Vps41 eIF2A PEP5_VPS11_N Cytochrom_D1 Ge1_WD40 Beta-prop_RIG_1st Beta-prop_WDR11_1st GlnR_1st
Other DBs
NCBI-GeneID: 112178672
NCBI-ProteinID: XP_024172623
LinkDB
Position
7:10428005..10430801
AA seq 509 aa
MSQEEVARKAIKHALKALRKRHLLEEGAHAPAYIALANPIAHQGSEWKEKADNLELELQQ
CYKAQSRLSEQLVVEVAESRSSKALLQEKEAAIVDQQNELTQKRDECSQLKAELEKKIQA
LELVMSENNEIRAQLEEMSVRAKNAEAENKVLIDRWMLEKMKDAERLNEANALYEEMLER
IKASGLQKLAMQQVDGVVRQSEEGAEYFVESTNPTTCKNRINAHDGGCASILFEYNSGKL
ISGGQDGTIKMWDTSTGALTNTLHGCIGSVLDLSITHDNRSIIAASSSNKLYIWDANLGR
VRHTLTGHMDKVCAVDVSKFSSRHIVSAAYDRTIKVWDLQKGYCTNTIIFPKHCNALCFS
MDGQTICSGHVDGNLRLWDIQKGKLLNEVAAHSNAVTSISLSRSGNMVLTSGRDNVHHLF
DMRTLEVCGTLRATGNRVASNWSRSCISPDDNYVAAGSADGAVYIWSIAKGDIVSTLKEH
TNSVLCCSWSGHGKPLASADKNGVICTWT
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgcaggaggaggtagctaggaaggcgattaagcacgcgctgaaggctctaaggaag
cggcatttgcttgaagaaggtgctcatgctccagcgtatatcgctctcgccaatccaatt
gctcatcagggctctgaatggaaggaaaaggctgataatttggaactggagcttcaacaa
tgctataaagctcaatctcggctgtcggagcagcttgtggtggaagtagcagagtctagg
tcttcgaaagctttacttcaggagaaagaagcagcgattgtggatcagcagaatgagctg
acacaaaaaagggatgagtgctctcagttgaaggcggagttagaaaagaagattcaagct
ctagagttggttatgagtgagaacaatgaaatacgggcgcagctagaagaaatgtctgtt
agagctaagaatgctgaagctgaaaataaggtgttaattgaccgctggatgttggaaaaa
atgaaggatgctgaacgcctaaatgaggcaaatgcactatatgaagaaatgcttgagcgg
atcaaggccagtggtttgcaaaaactagccatgcagcaagtagatggtgtggtccgccaa
agtgaagaaggtgctgagtactttgtggagtcaaccaatcccaccacatgcaagaacagg
atcaatgcccatgacggtggctgtgcttccatattatttgagtacaactcaggcaaattg
atttctggtggacaggatgggacaatcaaaatgtgggatacaagtacaggggctttgact
aatacacttcatggttgcattggttctgttcttgacctttccattacccatgataataga
tctatcatcgcagcaagcagttcgaacaaattgtacatatgggatgctaacttggggaga
gtgcgccatactctcaccggccacatggataaagtttgtgctgtagatgtgagtaagttc
tcaagtcgtcacattgtgagtgcagcctacgatcgtactataaaagtctgggatttgcaa
aaaggttactgcaccaacacaataatcttccccaaacactgcaatgctctttgcttcagc
atggacgggcagaccatttgctcaggtcatgttgatgggaatcttcggctgtgggatatc
cagaaaggaaagctactcaacgaagtggctgcacactcaaatgctgttacgtctatatct
ttgtcgcgaagtggcaacatggtattgacgagtgggagggacaatgtgcatcaccttttc
gatatgagaaccctagaagtttgtggcacattgagagccaccggaaacagagtagcatct
aattggagccggtcctgtatcagtccagatgacaattacgttgctgctggatctgccgat
ggtgctgtgtatatctggtctatagccaaaggtgacattgtgagcactctgaaggaacac
actaattctgtcctctgctgctcatggagtggacatggaaaacctctagcttctgcggac
aagaatggagtaatttgtacttggacgtga

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