Rosa chinensis (China rose): 112179008
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Entry
112179008 CDS
T06020
Name
(RefSeq) RNA helicase aquarius
KO
K12874
intron-binding protein aquarius
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112179008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112179008
Spliceosome [BR:
rcn03041
]
Complex B
Other components
Prp19-related factors
112179008
Complex C
112179008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
UvrD-helicase
UvrD_C_2
ResIII
AAA_22
SLFN-g3_helicase
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
112179008
NCBI-ProteinID:
XP_024173074
LinkDB
All DBs
Position
1:complement(7402327..7412700)
Genome browser
AA seq
1547 aa
AA seq
DB search
MTKVYGTGAYDFKRHHVAEYPVELNQQLGDKPVEAKPGAALPSSITLSEIQRDQLTMIAA
ANWSKAGGDAGQVKKAFDSELVKKIYETELCVKEGQRKTVPLQRVMILEVSQYLENYLFP
NFVPETATFEHVMSMILMVNEKFRENVAAWVCFHDRKDAFKGFLGRVLRLKSERESSIAE
KTNYLVFMINAFQSLEDEIVSETVLRLASFQSWHSLSYGRFQMELGLNSDLIKKWRRMIK
REAAKHGESFNPSTTLEVQFLRNLIEEFLEILDSKVLPPNHGVNGEDQLLAANGMEHIDD
ACVLYCERFIEFLIDLLSQLPTRRYLRPLVADVAVVPKCHLSALYRHEKGKLFTQLVDLL
QFYEGFEINDNVGKQLTDDEVLQSHYDRVQSFQLLAFKKIPKLQELALANIGSIDNRNDL
TKRLSVLSHEELKDLVCSKLKLISKNDPWSSRVDFLTEVMVSFFKRQQSQKEKINALPLY
PNELIMWDESLVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFDLFRLESTYEIREDIQE
AVPHLNACINNEGETAFRGWSRMAVPIKEFKISEVKQPNIGEVKPAAVTAEITFSISSYR
AQVRSEWNALKEHDVLFLLSIRPSFEPLSAEEGAKASVSQRLGLQYVRGCEIIEVRDEEG
TLMNDFTGRIKRDEWKPPKGELRTLTVALDTAQYYMDVSNTAAKGAEDVYGTFNILMRRK
PKENNFKAILESIRDLMNEYCIVPDWLHKTFLGYGNPSAAQWTNMPDLLETVDFKDTFLD
ADHLKECFPDDQVFFVSPDGIENMDPRPPFRIKLPKKIKSSTNALPGNKKAKINSMSDAP
IEDSDSEKEKFVVEAYTPPDPGPYPQDQPRQNSVRFTPTQVGAILSGIQPGLTMVVGPPG
TGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQEL
ATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQ
FLAACNQNKNKQSFVKDRFPFKEFFSNAPKPVFTGESFEKDMRAAKGCFRHLKTVFQELE
ECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILE
IETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIP
YIELNAQGRARPSIAKLYNWRYRELGDLPYVKEDAVYNRANSGFSFEYQLVDVPDYHDRG
ESAPSPWFYQNEGEAEYIVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCAPYD
FIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLIVAMSRARLGLYVFCRRSL
FEQCYELQPTFQLLLLRPDRLALNFNETTPHTERHVEETGPVHLVSSVDEMISIYQQLYA
VKFHQYVAPSSQLVPSMDALGEQTSQQTGMSGHIPMDADIPVSADGAPDDTLQGSNSELS
EELDVANGQKVDSSIENHTNGVTEMETSLDDAHVAPESNSDQVKMEE
NT seq
4644 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaggtgtacggaacaggcgcgtacgatttcaagcgccaccatgttgccgagtac
ccggtggagctgaaccaacagctcggagacaagccggtggaggctaaacccggcgcggcg
ctgccgagctcgataacgctgtcggagattcagagggaccagctcactatgattgcagct
gcgaattggtccaaagccggcggcgacgccgggcaggtgaaaaaggcgttcgactcggag
ctggtgaagaagatttacgagacggagttgtgtgtgaaggaggggcagaggaagacggtg
ccattgcagagagtgatgattttggaggtcagccagtacttggagaactatctctttccc
aatttcgttcctgaaacggcgacgttcgagcacgttatgtccatgattctcatggtcaat
gagaagtttcgagagaatgtggcagcttgggtatgctttcatgaccggaaagatgcgttt
aaaggattccttggaagggttcttcgacttaaatcggaaagagaatcaagtatagcagag
aagacaaattatctagtattcatgataaatgcatttcagagtttggaagatgagatagtc
agtgagactgtccttaggttggcaagtttccaatcctggcacagtttgtcgtatggtcgt
tttcagatggagctaggtttaaattcagatttgatcaagaaatggagaaggatgataaag
agggaagctgcaaaacatggagagtcttttaacccctcaactacacttgaagtccagttt
ttgagaaacctcatcgaagaattcctggagatacttgattccaaagtcttaccgccaaat
catggtgtcaatggagaggatcaacttcttgctgccaatggaatggaacacattgatgat
gcttgtgttttgtactgtgagaggtttatagaatttcttattgacctcttgagtcaacta
ccaacaaggaggtacttgaggccacttgttgctgatgttgctgttgttccgaaatgccac
ttgagtgctttgtatagacatgaaaaggggaagctctttacccaacttgttgacttgctg
cagttttatgaaggatttgagattaatgataatgtcgggaaacaattgacggatgatgaa
gtgctccaatctcattatgatcgagtacaatctttccagctgcttgcttttaaaaagatt
cctaagttgcaagagcttgcattggccaacattggttcaattgacaaccgaaatgatctc
actaagagattgtctgttctttctcatgaagaattgaaggatttggtttgttcaaagttg
aaactgatttctaagaatgatccttggtcatccagggttgatttccttactgaagtgatg
gtttcctttttcaagaggcaacagtctcaaaaagaaaaaataaatgctcttccactgtat
ccaaatgagcttatcatgtgggatgaaagccttgtgccaagcattaattactctggagaa
ggttgtctggctcttccaaaacttaatttacaatttttgacgctgcatgattatctcctg
agaaattttgatctcttccgccttgaatcaacatatgagatccgtgaggatattcaggag
gctgtgccacatctgaatgcctgcattaataatgagggagaaactgctttccgtggttgg
tcaaggatggctgtgccgattaaagaattcaagatcagtgaggtaaaacagccaaatatt
ggagaagttaaaccagctgctgtgacagcagaaatcacttttagtatatccagttataga
gcacaggtacgatctgaatggaatgctcttaaagagcatgatgttctatttttactttcc
atacgcccttcctttgagcctctaagtgcagaagagggtgccaaggctagtgtgtctcag
aggcttggtcttcaatatgtacggggttgtgaaatcattgaggttcgtgatgaggaggga
actctaatgaatgatttcactggaagaattaaacgggatgagtggaagcctccaaaagga
gagttgagaactttgactgttgctttggataccgctcagtactacatggatgttagcaac
actgctgcaaagggtgcagaagatgtttatgggacattcaatattttgatgaggagaaag
cccaaggaaaataatttcaaagcaattttagaatccattagagatcttatgaatgaatat
tgtattgttcctgactggttgcacaaaacatttctggggtatggtaatccttctgccgca
cagtggactaatatgccagatctcttagaaaccgtagatttcaaagatactttccttgat
gcagaccatctgaaggaatgttttccagatgatcaggttttctttgttagtccagatggt
atagaaaatatggatccaaggcctccttttcgaataaagctccccaagaagatcaaaagc
agcactaatgctcttccgggcaataagaaagcaaagattaattctatgagtgatgccccc
attgaggactctgatagtgagaaagaaaaatttgttgttgaggcatacacccctcctgac
ccaggtccttatccgcaagaccagccaaggcagaactcagttagatttacacccactcag
gttggagcaatcctatcaggtattcagccaggactaacaatggttgtgggtccacctggt
acgggaaagactgatacagccgtgcaaattttgaatgttctgtatcataattgtccatct
cagagaacattgataattactcactcaaaccaggctctaaatgacctttttgaaaagata
atgcagagggatgtacctgcacgctatcttcttcgacttgggcaaggagaacaagagcta
gcaactgatcttgacttcagtcggcaaggccgtgtcaatgccatgcttgtgaggcggttg
gagttgcttagtgaagtggagaggctggcaagatctctccaattgcccgaggatgttggt
tatacatgtgaaactgctggatacttttggttgcttcatgtatactcgcgctgggagcaa
ttcctggctgcttgtaaccaaaataaaaataaacaatcatttgttaaagatcgatttccc
ttcaaggaattcttctccaacgcaccaaagccagtttttactggtgagtcatttgagaaa
gatatgcgggcagctaagggttgctttcgtcatctaaagactgtgtttcaagagcttgaa
gagtgtagggcttttgagttactgaagtctacagctgatcgagcaaactacttgatgacg
aagcaggcaaagatagttgccatgacatgcactcacgcagctctgaagaggaaggatttt
ctccagttaggtttcaagtatgataacttgctgatggaagaaagtgctcaaattttggag
atcgaaactttcattccaatgttgctccagaggcaggaagatggttatgcacggcttaaa
cgttgtatcctgattggtgatcatcaccagttgcctcctgttgtcaagaatatggccttt
caaaagtatagccacatggaccagagtctctttacaaggttcgtccgtttgggcattcct
tatattgaacttaatgcccagggtagggccaggccaagtatagccaaactttacaactgg
aggtatagagaactaggagaccttccttatgtaaaggaagatgctgtttacaatagagca
aattctggattctcctttgaatatcaattggtagatgtaccagattaccatgatagaggt
gagtctgccccatcaccttggttctaccaaaatgagggagaagctgaatatatcgtcagt
gtgtatatctacatgcgtctacttgggtaccctgcaaacaagatatcaatattgaccact
tacaatggccagaagcttttaatccgtgatgttatcaacagacgatgtgctccgtatgac
ttcataggccctcccagtaaggttacaacagttgacaaatttcagggtcagcaaaatgat
tttatattgctctctcttgtgcgtactcgctttgtgggtcaccttcgtgatgttaggagg
ttgattgttgccatgtctcgtgcccgattgggtctgtatgtgttttgccgccgttctttg
tttgagcaatgctacgaacttcagcctaccttccaacttttacttctgagacctgatcgc
cttgctctgaattttaatgagactacaccacacacagaacgccatgttgaagaaacgggg
cctgtccatcttgtaagcagtgttgatgagatgatcagtatctaccagcagctttatgcg
gtgaagtttcatcagtatgttgctccttcaagtcaattagttccatccatggatgcattg
ggagagcaaacaagtcagcaaactggtatgtctgggcacattcctatggatgcagatatc
cctgtatctgctgatggggcgccagacgatacactgcagggaagcaattcagaactgagc
gaagaattggatgtcgcaaatggccaaaaagtggattcgtcgattgagaatcatacaaat
ggggtgacggaaatggaaactagtctggatgatgcacatgtggctcctgaaagcaattcg
gatcaagtgaaaatggaagagtag
DBGET
integrated database retrieval system
