Rosa chinensis (China rose): 112179066
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Entry
112179066 CDS
T06020
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03030
DNA replication
rcn03420
Nucleotide excision repair
rcn03430
Mismatch repair
rcn03440
Homologous recombination
rcn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112179066
03420 Nucleotide excision repair
112179066
03430 Mismatch repair
112179066
03440 Homologous recombination
112179066
03460 Fanconi anemia pathway
112179066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rcn03000
]
112179066
03032 DNA replication proteins [BR:
rcn03032
]
112179066
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112179066
Transcription factors [BR:
rcn03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112179066
DNA replication proteins [BR:
rcn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112179066
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112179066
MMR (mismatch excision repair)
112179066
DSBR (double strand breaks repair)
HR (homologous recombination)
112179066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
112179066
NCBI-ProteinID:
XP_024173147
LinkDB
All DBs
Position
7:4155038..4158567
Genome browser
AA seq
608 aa
AA seq
DB search
MAKLGPTPDAISTLLANPSPKESSPIPEIVVQVVDLNLKGINRYMFTASDGKMRLKTMLN
TELSPDVISGKIQNLGLIRLLDYTVNDIPNKPEKYMIVTKCEMVSPALEMEIKSEVSKDE
VKGEQVGIILKPKQEMVTKSAAQIMHEQNANMAPAARMAMTRRVHPIVSLNPYQGNWTIK
VRVTNKGTMRTYSNARGQGCVFNVELTDEDGTEIRATMFNEAAKKFYEKFQLGKVYYVSK
GALKVANKKFSTVQNDYEMTLNENSEVDEVSNEEAFVPETKFDFIPIDMLGPHVNSKVLV
DVIGVVTNVSPTMSIRRKSDNENIPKRDITIADESKKVVVVSLWNDLATGVGQELLDIAD
QSPVVAIKSLKVGDYQGVSLSTLSRSSIFVNPDLPEAKRLKSWYDSEGKEVSMASVGSGM
SPSANSGAWSMYSDRISLSYLKDNPSLGEDKPVFFSVKAYISSIKPDQTLWYRACKMCNK
KVTESLDGGFWCDGCQKNAEECSLRYILVARAMDATSEVYLSVFNNEAERIIGCSADELD
KLRSEEHSLYEVKLKQATWVPHVFRVSVSQNEYNNEKRQRITARAAAPLDFAAESKFLLE
EISKMKAS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcttggaccaaccccagatgcgatttcgaccctcttggccaacccatcgccg
aaagagtccagcccgatcccggagatcgtcgtccaggtcgtcgacctcaatcttaagggc
atcaaccgttatatgtttactgctagtgatggaaagatgaggctaaagacgatgttgaac
acagaattgagtcctgatgttatttctgggaaaattcagaacctgggcctcattcgactt
cttgattacactgttaatgacattccaaacaagcccgaaaaatatatgattgtaacaaaa
tgtgagatggtctcacctgcgcttgagatggagattaaaagtgaggtcagtaaagatgag
gtgaaaggagaacaggttgggattattttgaagcccaagcaagagatggtgactaaatca
gctgctcaaattatgcatgagcagaatgcaaatatggccccggctgcacgaatggccatg
accagaagggttcatcctattgtttccttgaatccttatcaaggcaattggaccataaag
gttcgtgttacaaacaagggaaccatgcgtacttactcgaatgctagaggtcaaggctgt
gtcttcaatgtggagttaacagatgaagatggaactgaaattcgagctacaatgtttaat
gaagctgccaagaagttctatgaaaagtttcaactagggaaggtctattatgtttcaaag
ggagctctaaaggttgctaacaagaagtttagcacagtacaaaatgattatgaaatgacc
ttaaatgagaattctgaggtggatgaagtcagcaatgaagaagcttttgttcctgaaaca
aaatttgattttatcccaattgatatgttgggtccccatgttaacagcaaggtgcttgtg
gatgttattggagttgttacaaatgtgtctcctacaatgagcatcagaagaaagagcgac
aatgagaatatcccaaagcgtgacattaccattgccgatgagtcgaaaaaagtggttgtg
gtttctttatggaatgatcttgcaactggtgttggccaggaattgctggacattgctgat
caatctcctgtagttgctatcaaatcccttaaagttggagactatcaaggtgtatccttg
tctacgttgtccaggagctcaatatttgtaaatccagatttacctgaagcaaagaggttg
aaatcctggtatgattctgaaggtaaagaggtttcgatggcatctgttggctctggtatg
agcccatcagccaatagtggagcatggtccatgtactctgatagaatctccctgtcttat
ttgaaagataacccgtccttgggtgaggacaagcctgtgtttttcagtgttaaagcttat
ataagctccatcaagcctgatcagactctctggtaccgggcttgcaaaatgtgcaacaaa
aaggtgactgaaagtctggatggtggtttctggtgtgacgggtgccagaaaaatgctgaa
gaatgcagtttaaggtatatattagttgcaagagctatggatgcaactagtgaagtatat
ctttctgtgtttaataatgaagcagagagaattattgggtgctctgcagatgagctggac
aaactgagatcagaggagcacagtctgtacgaggtgaagttgaaacaagctacttgggtc
cctcatgttttcagggtcagtgtttctcagaatgagtacaataacgagaagaggcaaagg
ataactgccagggcagctgctccacttgattttgctgctgaatcaaaatttttgctagaa
gagatatcaaagatgaaagcttcctaa
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