Rosa chinensis (China rose): 112179104
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Entry
112179104 CDS
T06020
Name
(RefSeq) chaperone protein ClpD, chloroplastic
Organism
rcn
Rosa chinensis (China rose)
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Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
ClpB_D2-small
AAA_5
Clp_N
AAA
AAA_16
AAA_22
Sigma54_activat
NBD_SMAX1
AAA_7
RsgA_GTPase
IstB_IS21
nSTAND3
AAA_25
Zeta_toxin
bpMoxR
AAA_23
nSTAND1
NACHT
T2SSE
Motif
Other DBs
NCBI-GeneID:
112179104
NCBI-ProteinID:
XP_024173197
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All DBs
Position
7:7862387..7867710
Genome browser
AA seq
967 aa
AA seq
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MHVSSSSSVLISSPLQWRTPSQRVSFTHLPLQSVTTCTTISYARDRRNAVVSLYPIRLIH
NPFSSSFLSQTKAAPFHGGRRRKNSKLQIVSAVFERFTERAIKAVIFSQREAKALGRDMV
FTQHLLLGLIAEEEQQHRHLHPNSRGFLGSGMTLEQARRAVRSIWRHNSQSQSKSQGQAA
SAAGSGSGSARDLSFSISAKRVLEAALEYSRSRAHNFIAPEHIVIGLLTVDDGSAGQVLK
RLGVNVNQLLAEAASRLQIELARDGREPSGGSQKTISKKSTASSEKIKEKSALERFCVDL
TARASEGRIDPVIGRDTEVQRIIQILCRRTKNNPILLGQSGVGKTAIVEGLATSIAQADV
PVYLLTKRVMSLDVALLMAGAKERGELEARVTSLISDVQKSGNVILFIDEVHTLIESGTV
GRGNKGSGLDIANIMKPALGRGKLQCIASTTTDEYRMHLEKDKAFGRRFQPVWINEPSQD
DAVRILFGLREKYEAHHNCIYAPEAISAAVYLSARYIPDRYLPDKAIDLLDEAGSRARME
AFKKKKEERVGILSKSPDDYWQEIRTVQAMHEVVLSSELKNGAASVDDTREHILESISSS
TVDDEPTVVGPNDIAAVASLWSGVPLQQLTADDRLLLVDLDEKLRRRVVGQDEAVAAISR
AVRRSRVGLKDPSRPMATMLFCGPTGVGKTELTKALSACYFGSEEAMVRLDMSEYMERHS
VSKLIGSPPGYVGFGEGGTLTEAIRRRPFTVVVLDEIEKAHPDIFNILLQIFEDGHLTDS
QGRRVSFKNALVVMTSNVGSTIIAKGRKSSIGFVLTDDESSTYAGIKATVMEELKSYFRP
ELLNRIDEVVVFHPLEKSQMLEIVNIMLQEVKQRLISLGIGLEVSESVKNLICKEGYDRI
YGARPLRRAITLIIEDPLSEALLAGVYQPGDTAVIDLDASGNPSVSNGSGQSSIPFSKTN
IQHPSCN
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgtcgtcatcctcctccgtgctgatatcatctccactccaatggagaactcca
tctcaacgcgtatcattcactcatcttcccttacaatcggttacgacttgcactactatc
agttacgcccgtgatcgcagaaacgccgtcgtttccctctacccaattcgccttatacac
aacccattttcttcttccttcttgtcccaaaccaaagccgctccctttcacggcggccgg
aggagaaagaactcgaagctccaaatcgtctccgccgtcttcgagcggttcacggagcgc
gcgatcaaagccgtcatcttttcccagagagaagccaaagctctgggccgggacatggtg
tttactcagcacctcttgctcggtttgatcgccgaggaggagcagcagcatcgccatctc
catcccaattcgcgcgggtttctcgggtcgggcatgaccctggagcaggcccgccgcgcc
gtccggagcatttggcggcataatagtcaaagtcaaagtaaaagtcaaggtcaagctgct
tctgctgctggttctggttcgggctctgctagggatctctcgttttcgattagcgcaaag
agagttctggaggctgcgctggagtattcgaggagtagagctcataattttattgcaccg
gagcacattgtcatcggtttattgaccgttgatgatgggagtgctggtcaggtccttaaa
agactgggggtaaatgtaaaccagttgttagccgaggcagcctccagacttcaaatagag
cttgccagagatggtagagaaccatctgggggatctcaaaagacgatttctaaaaagtca
actgcatcgtctgagaaaatcaaagaaaaaagtgctttggagcggttctgtgtggatctc
actgctcgtgctagtgagggacgcattgatcctgttattggccgggatactgaagtacag
agaattattcagatactttgtcgcagaactaaaaataatcccattcttctcggtcaaagt
ggggttggaaagacagccattgttgaaggtctggcaactagtattgcacaggcagatgtc
cctgtttatctgttgacaaaacgcgtaatgtctttggacgtggcactgttaatggctggt
gcaaaggagaggggagagttggaggcgcgtgttacctccttaataagtgatgtacaaaaa
tcaggaaatgttattctgtttattgatgaagttcatactcttattgagtccggcacagtt
ggacgaggaaataaggggtctggtcttgacattgctaatataatgaaaccggcacttggg
aggggtaaattacagtgtattgcatcaactactaccgatgaatacaggatgcatcttgaa
aaggataaagcgtttggacgaagattccaacctgtctggatcaatgaaccaagccaggac
gatgcagttaggattctgtttggtttgcgtgagaaatatgaggcccatcacaactgcata
tatgcaccagaagccattagtgctgctgtgtacctgtcagcaagatatattcctgataga
tatcttcctgataaagctatcgatctccttgatgaggcgggaagtagagctcgtatggaa
gcctttaagaagaaaaaagaagagcgggttggtatactttcaaagtcacctgatgattat
tggcaagaaattcgtacagttcaggcaatgcatgaagtggtcctatcgagtgaactgaaa
aatggagctgcttctgtggatgataccagagaacatattctagagtccatttcatcttcc
acagtagatgatgaacctactgtggtgggaccaaatgatatagcagcagttgcctcacta
tggtcaggagtccctcttcagcagctcactgctgatgaccgactgcttttggtggatctt
gatgagaagctcagaagacgggttgttggtcaagatgaggctgttgcagccatttctcga
gctgttaggaggtcccgggttggattgaaggatccaagtagacccatggcaacaatgctc
ttttgcggtcctactggagttggcaaaactgaactgacaaaagctttgtctgcatgttat
tttggatcggaggaagccatggtacgactggacatgagtgaatatatggagcgacactct
gtcagcaaattaatagggtcacctccaggctatgttggctttggagagggaggcactcta
acagaagctatcagaagacgaccttttacagtagttgtgcttgatgaaatcgagaaggcc
catccagatatattcaacatccttctccaaatctttgaagatggccaccttactgattct
cagggacgaagagtatcgtttaagaatgctttggtagtgatgacatctaatgtgggttcc
actatcattgcaaagggtcgaaaaagctccattggttttgtgcttacagacgatgagtca
agtacatatgccgggataaaagcaacagtaatggaagaactcaagtcatattttcgtcca
gagttgctgaacaggatagacgaagtagttgtattccatccccttgaaaagtctcagatg
ctggagattgtaaatataatgctgcaagaagtgaagcagaggctaatatctctgggaatt
ggactagaggtgtctgaatcagtcaagaacctcatatgcaaagaaggctatgatcggatc
tatggtgctcgccctcttagacgagcaattacattaataattgaagacccattgagtgaa
gccctcctagccggagtttaccagcctggtgacactgccgtcattgatttagatgcttct
gggaacccttctgtaagtaatggatcaggtcagagtagtatccctttctctaaaaccaat
atacagcatccatcttgtaattaa
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