Rosa chinensis (China rose): 112179185
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Entry
112179185 CDS
T06020
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112179185
03015 mRNA surveillance pathway
112179185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112179185
03041 Spliceosome [BR:
rcn03041
]
112179185
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112179185
Spliceosome [BR:
rcn03041
]
Complex C
Other components
EJC/TREX
112179185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
112179185
NCBI-ProteinID:
XP_024173296
LinkDB
All DBs
Position
7:complement(45002999..45007749)
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AA seq
423 aa
AA seq
DB search
MMASAAVEKTEEVLRKEIDELQRQQREITERLRDPRGLRKGGGGGSAAAPPRNFGANGAR
PRGFTRPADRADVEDQPPAKRRLSSAVVKVEDGEIVESAEGTKDAKNKESSEAAIADHSD
RRLSNSQQGSWLRRDGSHGAGKKEFDIPATDHVPRVLPKQEDPSLVNRNKRMLGQLLGTL
EKFRKENVQLSGTEAFMRRSNSLQRAEERAREESERLRIQEREQIAEKRRRDLTLRARVS
AKTEEKKLELLFLQWSEHHKKLSNFIRTKAEPPIYYLPKKPLDEDATLAEQRKEKEFLEW
KAARREELSNYQKQIGEQYLANVEKELERWQNARKARKANNDTMNLQETMDKELDTHRLE
HGPKKRKIPDGSNNEDEDDVEDINVVEDDLMDDVLDVDDNSRMVDETAKSDAGNASPNAE
NVD
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaagcgccgcagttgagaaaacagaggaggtgctccgcaaggagatcgatgag
ctccaacgccagcagcgcgagattacggaacgccttcgagaccctaggggactccgcaag
ggaggaggaggaggctcggcggctgccccgccccgcaactttggtgccaacggtgctcgc
ccccgaggctttactcgacctgcagatagggctgatgtggaggatcaacctcctgcgaaa
cgccggctttcgtcagctgttgtcaaggtcgaggatggagaaattgttgagagtgctgaa
ggaaccaaggatgcaaagaataaggagtcaagcgaggcggcgatagctgatcacagtgat
aggaggttgtcaaattcccaacaaggtagctggttaaggagggatggcagccatggagca
ggcaagaaggaatttgacattccagcaacggatcatgttccaagggtattgccaaagcaa
gaagaccctagcttggtcaataggaacaaaagaatgctcgggcaacttttgggcacttta
gagaaattcaggaaagaaaacgtgcaactctcaggaacagaagctttcatgcggagatcg
aattctttacaaagagctgaagaaagagcacgtgaagaaagtgaaagacttaggatacaa
gagcgcgaacaaattgcggaaaagcggaggagagatctgactctgcgggcacgtgtttct
gccaagacagaagaaaaaaaattggaactgctttttcttcagtggagtgagcatcacaag
aaacttagcaattttataaggactaaggcagagcctccaatatattatctacccaagaaa
ccattggatgaggatgctaccttggctgagcagcgaaaagaaaaggaattcctagaatgg
aaagcagcacgaagggaggaactgagcaattatcagaagcagattggggagcagtatcta
gcaaatgttgaaaaggagttggagaggtggcaaaatgcaaggaaagcaaggaaagcaaac
aatgatacgatgaacttacaggaaacaatggacaaagaattggacacacataggcttgag
catggtcccaagaaaagaaagatccctgatggaagcaacaatgaggatgaggatgatgtg
gaagatatcaatgtagtggaggatgacctgatggatgatgtgttggatgttgatgataac
agtagaatggttgatgaaacagctaaatcagatgcaggcaatgccagtccaaatgcggag
aatgttgattag
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