Rosa chinensis (China rose): 112179274
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Entry
112179274 CDS
T06020
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112179274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112179274
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112179274
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Step II factors
112179274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
Sigma54_activ_2
AAA_16
TsaE
ABC_tran
PhoH
GIPC1_GH2
T2SSE
Motif
Other DBs
NCBI-GeneID:
112179274
NCBI-ProteinID:
XP_024173417
LinkDB
All DBs
Position
1:45011132..45018292
Genome browser
AA seq
1204 aa
AA seq
DB search
MAVIDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRNCESVDEFDAKLKEHG
AEMPDYFVRTLLTIIHAILPPKAKSENDSKKESTAEGSKSKFKALSIADNRDRVKDIQRE
IELEAKEKRNDREEWGDGREEDRPKGRDGGRGRDRERDTNRDRDRDRDRDRDRDRDRRDR
RERGRDRYDRDERRRDNHYHDYDKGRHTDRSNKHRRDEYEKDGDVREDDVDRRGSRDQRN
GLHHSDEPELYKVYKGRVSKVMDTGCFVQFSDFRGKEGLVHVSQIATRRIGNAKDVVKRD
QEVYVKVISISGQKLSLSMRDVDQHTGKDLLPLKKNSEDDSLRTNPSISKDDGPVTRTGL
SGIRIVEEDVTAPSRRPLKRMSSPEKWEAKQLIASGVLGVKEYPMYDEETDGMLYEEEGA
EEELEIELNEDEPAFLQGQTRYSADMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQ
QRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTVTFGQRS
KLSIQEQRQSLPIYKLKKELVQAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIG
CTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILLDE
NLSQYSVVMLDEAHERTIHTDVLFGLLKKLVKRRPDLRLIVTSATLDAEKFSGYFFDCNI
FTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLY
ERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYV
IDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSP
TSVPEIQRINLGTTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLT
KLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAK
FFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVV
SAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHEL
VMTTKEYMREVTVVDPKWLVELAPRFFTVADPTKMSKRKRQERIEPLYDRYHEPNSWRLS
KRRA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgattgatgatggtttgaagaagctcgagtacctttccttggtttccaaggtc
tgttcagagctggaaactcatctagggtttggggacaaagttctagccgagttcataact
gagatgggacgaaactgtgagagtgtggatgaatttgatgccaaattgaaggaacacggt
gccgagatgcctgattactttgtccgtacactcctcactatcattcacgcaattcttcct
cccaaggcaaagtccgagaacgactcaaagaaagagagcactgctgaaggtagtaaaagc
aagttcaaggctttgtctattgctgataacagggatagggtaaaggatatccagagggaa
attgagttggaggccaaggaaaagcgaaatgacagagaagaatggggagatgggcgtgaa
gaagataggcccaaaggtagagatggaggtagaggtagggatagggaaagagatacaaat
cgagacagagacagggacagggacagggacagggacagggatagggataggagggatagg
agagagaggggaagggataggtatgatagagatgaaaggcggagagataatcattatcat
gattatgataagggaaggcatacagatcgatccaataagcacaggagggatgagtatgaa
aaggacggagatgttagagaagatgatgttgataggagaggaagtagggatcagcggaat
ggattgcaccattctgatgagcctgaattgtataaggtttataagggtagggtctcaaaa
gtgatggacacaggttgctttgttcagttcagcgattttagagggaaggagggtttggtt
catgtttcgcagattgctactcggcgaattggtaatgctaaagatgtggtgaagagagat
caagaggtctatgttaaggtgatttcaatttctggtcaaaagttgagcctgtcaatgagg
gatgttgatcaacatactgggaaggatttgctacctttgaagaagaactcagaggatgat
tctcttaggacaaacccatcgatatcaaaggatgatgggcctgtgacaaggacgggtctc
tctgggattaggattgtggaagaggatgttactgccccatctcgccggccattgaagaga
atgagctcaccggagaagtgggaagccaaacagttgattgcctcgggtgttttgggtgtc
aaagagtatccaatgtatgatgaagaaacagatgggatgctttatgaagaagagggagct
gaggaagaacttgagattgagcttaatgaggatgagccagccttcttgcaagggcaaacc
aggtattctgcagatatgtcacctgtgaaaatatttaagaatccagaagggtcattgagt
cgtgcagctgcacttcaatctgcactcattaaggagcgtagagaagtgcgtgagcagcag
caaagaaccatgttggattcaatcccaaaggatctgaatcgtccttgggaagatccaatg
ccagagactggtgagaggcatcttgcacaggaacttagaggtgttggtttgtcggcctat
gacatgcctgagtggaagaaggatgcttttgggaagaccgtcacttttgggcagaggtca
aagctttcaattcaggaacagaggcagagcttgcctatctataagctgaagaaagaattg
gttcaggcagtgcatgaaaatcaagttcttgttgtcattggtgagactggttcaggcaag
acaacccaggtaacgcagtatcttgcagaagctgggtacacgacaatgggtaagattggg
tgtacacagccacgtagggtggctgcaatgtctgtagccaagagggttgctgaagagttt
ggttgtcgtctgggggaggaagttggatatgctattcgttttgaggattgcactggacct
gatactgtaatcaagtacatgacggatggtatgcttcttagggagattctacttgacgag
aacctttctcagtactctgtggtcatgcttgatgaagctcatgagaggacaatccataca
gatgttctttttggattattgaagaaacttgtgaagcggagaccagaccttcgtttgatt
gtcacatctgctaccttggatgctgagaagttttcaggttatttcttcgattgtaacatc
ttcactatccccggaagaacttttcctgtagagatactctacaccaagcagccagaaagt
gattatcttgatgcatctttaatcactgttctacaaattcacttaacggagccagaaggt
gacatccttctctttttgacgggacaggaagaaattgattttgcatgccagtcactatat
gagaggatgaagggtcttggtaaaaatgtgcctgagttgattatcttaccagtttatagt
gcccttcccagtgaaatgcagtcgaggatatttgatccagccccacctgggaagaggaaa
gtagttgtggctaccaatatagccgaggcatctctgaccatcgatgggatattttatgta
attgaccctggatttgcaaagcaaaatgtttataacccaaagcaggggctagattcacta
gtcataactccaatatcacaagcatcggccaaacaacgagctgggcgtgctggccgtaca
gggcctgggaaatgttaccgcctttacactgagagtgcataccgcaatgagatgtcccct
acttcagttccagaaattcagaggataaatcttgggactactacattaacgatgaaagca
atggggataaatgatctcttgtcttttgattttatggatcctccttcaccccaagcactc
atttctgctatggaacaactatacagtttaggagccctagatgaagagggtcttctgacc
aaattgggtaggaaaatggccgagtttcctctggatccaccattatctaagatgctactg
gccagcgtggaccttggatgcagtgatgagatcctgactatcattgccatgattcagaca
ggcaatatattttacaggcctagggaaaagcaagcccaggctgatcagaagagagccaag
tttttccagccagagggagatcatctgactttacttgcagtctatgaggcttggaaagct
aagaacttttcagggccttggtgttttgagaactttgttcagtctcgatctcttaggagg
gcgcaggatgtcagaaaacagcttctaagcatcatggataagtataaactggacgttgtg
agtgctggaaagaattttacaaagatcaggaaggcaattactgcaggctttttcttccat
gctgctagaaaggacccacaggaggggtatagaaccctagtggagaaccagccagtttat
atccatccaagcagtgctctctttcagagacaaccggattgggtcatctaccatgagttg
gttatgactacaaaggagtatatgcgggaggtgacagttgttgaccccaaatggcttgtg
gaactagcacccaggttcttcacggtggctgatcctaccaagatgagtaagcgcaagcgt
caagaacgtattgaaccgctatatgacagataccatgaaccaaactcctggcgtcttagt
aaacggcgtgcttga
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