Rosa chinensis (China rose): 112179320
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Entry
112179320 CDS
T06020
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112179320
09124 Replication and repair
03420 Nucleotide excision repair
112179320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112179320
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112179320
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112179320
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112179320
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112179320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
Motif
Other DBs
NCBI-GeneID:
112179320
NCBI-ProteinID:
XP_024173476
LinkDB
All DBs
Position
7:complement(14992413..14999224)
Genome browser
AA seq
768 aa
AA seq
DB search
MGHGEKSHRPSKKHKSSAKESIPVEDYEAYVGGEELDDDVRGDGEVKKRDFTKLELKPDH
MNRPLWACADGRIFLETFSALYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL
ETQTIISVLDKLSKTKLPKEMIDFIHGSTANYGKVKLVLKKNRYYVESPFPEVLKKLLRD
DVISKSRIIPEGANGNGGFTISKTLGEIAADSSGLLNEAELAAAAEEKETHAFEIDPSQV
EKVKERCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
GIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAQMFRKV
IAITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHVERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGKLRDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
FKVITSLPPPDSGADLSYHRLDEQLHLLTKVLTAGDDAVGLEQLDEDVDDIALHKSRRFS
GSMSAMSGANGMVYMEYSTGKNKNGKGQMKSKPKDPAKRHHLFKKRFA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggacatggtgagaaatcccaccgacccagtaaaaagcacaaatcgtcggccaaggaa
agcatccccgtggaggactacgaagcctacgtcggcggcgaagaactcgacgatgacgtt
cgcggcgacggtgaagttaaaaagagggattttactaagctggaattgaaacctgaccac
atgaatcggcctttgtgggcctgcgccgatggtagaatatttctcgagacgttctcagct
ttgtacaagcaagcctatgattttctcatcgccattgctgaaccggtttgcaggccggag
tcgatgcacgagtacaacttgaccccgcattccttgtatgcggccgtgtctgttggtctt
gaaacccaaactatcatttcggttttggataagctgtcaaagaccaagctccccaaagaa
atgattgatttcatacacggttctacggctaattacggcaaagtgaagcttgtgctgaag
aagaatcggtattatgttgaatccccattcccagaggtattgaagaaattgctcagggat
gacgttatatccaaatcaaggattattcctgagggtgctaatggaaatggtggatttaca
attagcaaaaccttgggcgaaattgcagccgattccagtggtttgctaaatgaagcagaa
ttggcagctgcggctgaagaaaaagaaactcacgcatttgaaattgatccttcacaggtt
gagaaagtaaaagaacgttgtttgccaaacgctttgaactatcccatgttggaggagtat
gacttcagaaatgatacggttaaccctgatcttgatatggaactcaagcctcaagcgcaa
ccacgaccatatcaagagaagagcttgagtaaaatgtttggaaatgggagagcacgatct
ggcattattgtgttaccttgtggtgctggaaaatctctagttggtgtttctgcagcctcc
cgaataaaaaagagctgcctttgtctagcaacaaatgctgtttctgttgatcaatgggct
tttcagtttaaattgtggtcaaccattcgagatgaacacatttgtcgtttcacatctgat
agcaaagaaagattccgtggaaatgctggggtggttgtgacaacatataacatggttgcg
tttggtggcaagaggtccgaagaatctgaaaagattattgaagaaataagaaatagagaa
tggggattgcttctcatggatgaggtgcacgttgttcctgctcagatgtttcgaaaggtt
atcgccattaccaaatcacactgcaagcttggactgactgccacgcttgtgagagaggat
gagaggatcacagatctgaatttccttattggtcccaaattgtatgaagcaaactggctg
gatttggtaaaaggtggatttattgcaaatgtacagtgtgctgaagtatggtgtccaatg
acgaaggagttctttgcagaatatttgaagaaagagaactccaagaaaaagcaggcactt
tatgtgatgaatccgaataagtttagggcttgtgagtttcttatacggtttcatgaacag
caacgtggtgataaaattatcgtctttgctgacaatctctttgctctcacggagtatgca
atgaaacttcggaaaccgatgatctatggagctaccagccatgttgagaggacaaagatc
ttagaagccttcaaaacaagtcgggacgtaaatactgtattcttgtcaaaggtgggagat
aattctattgacattcctgaggcaaatgtgataattcagatatcatcacatgctggttca
agacgtcaagaagcacagcgtcttggtcgtattctgagggccaagggtaaacttcgggat
cggatggcaggaggcaaagaggagtataatgcattcttttattctctcgtgtcaactgat
acacaggagatgtactattcaactaaacgacaacagtttttgattgatcaagggtatagt
tttaaggttattacaagcttgcctccacctgattcaggagctgatttgagctaccaccgt
cttgatgagcaactgcacctactcacaaaggtgttgactgctggtgacgatgctgttggc
ttagagcaactagacgaagatgtggatgacattgcccttcataaatcacgtcgtttctct
ggatccatgagtgcgatgtcgggtgccaatgggatggtttacatggaatatagtactggg
aaaaacaaaaatggcaaaggacagatgaagagtaagcccaaggatccggccaagagacat
catttgtttaaaaagcgctttgcctga
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