Rosa chinensis (China rose): 112179880
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Entry
112179880 CDS
T06020
Name
(RefSeq) rhamnogalacturonate lyase isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
112179880
Enzymes [BR:
rcn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
112179880
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
RhgB_N
AHSA1
Endotoxin_C
Motif
Other DBs
NCBI-GeneID:
112179880
NCBI-ProteinID:
XP_024174140
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All DBs
Position
7:58200730..58205998
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AA seq
733 aa
AA seq
DB search
MSTFPVGLGKGPIRTIFSLSTITWISAKLGTMILLLFSSQTFLDEDLFIQATTSENTTGL
QLHIFNQYVVMDNGILQVNLSKPEGMVTGIQYKGIDNLLEVLEDETNRGYWDMVWSAPGI
TRKKGAFDRMEGTNFTVIVETEDQIELSFTRMWDPSLEGKVVPLNIDKRFVLLRNSSGFY
TYAIYEHLKEWPAFNLTNTRTVFKLRKDKFHYMAISDSRQRHMPLPDDRSEKRGQALAYP
EAVLLVNPVEPEFKGEVDDKYQYSVENIHNRVHGWIANDSQVGFWQITPSEEFKSGGPFK
QCLTSHVGPITLAIFHSTHYSGGELILQFGSNEPWKKVFGPVFFYLNSLGDGANPFQCLW
EDAKQQMNDEVERWPYDFPASKDFLSPKQRGTVSGRLLVRERYVTDDKDVPGNGTLVGLA
APGVVGSWQLECKGYQFWTKADNDGYFSIHGVRPGTYNLYAWVPGFIGDYRDVSEIVVTP
GLILLQSFYFIYVLSYIIFGLSYTNVNYAADGDVDVGTLVYEPPRTGPTLWEIGVPDRTA
AEFYVPDPNPKYINKLYVNTDRFRQYGLWERYAELYPDNDLVYTIGVSDYRKDFFFAQVT
RKTGNNTYKGSTWQIRFNLDNVDKNTTYKLRVSLATAHVSELQVRINDPDSENDPLFTTG
QIGNDNTIARHGIHGLYRLYNVVIPSAQLVDGNNTIFLTRELSVSPFQGIMYDYIRLEGP
QSSNDNNNIGFSS
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacctttcctgttggattaggcaaaggaccaatccgcaccattttttcgctttcc
acaataacatggatttcggcaaagttgggtaccatgattctcctcctcttctccagccag
acatttctggatgaagatctattcatccaagccactacttcagaaaatacaacaggcctg
caactgcatatcttcaatcaatatgtggtcatggataatggcattctccaagtcaatctt
tcaaaaccagaggggatggttactggaatacaatataaaggcatcgacaatctgcttgaa
gttcttgaagatgaaaccaatagagggtactgggatatggtttggtctgcaccaggaatt
acgagaaagaaaggcgcatttgataggatggaaggaacaaattttacggttatagtggaa
actgaggatcagatagagctttcattcaccagaatgtgggatccctctttagagggcaaa
gttgtccctttaaacatagacaaaaggttcgtgttgcttcgtaactcgtcgggtttctac
acttacgccatttatgaacacttgaaggaatggcctgctttcaacttgaccaacaccagg
actgtgtttaagctcagaaaagacaagtttcattacatggcaatatcagacagcaggcaa
agacacatgccccttcccgatgatcgatcagaaaaaagagggcaagccctggcttacccg
gaggcggtcttgctcgtcaatccggtcgagccagagttcaaaggagaggtggatgacaaa
tatcaatattcggttgagaacatacataatcgggtgcatggatggatagcaaatgactca
caggttggattttggcagattactcccagcgaagagtttaaatctggaggtcccttcaag
cagtgccttacttcacatgtgggacccatcacccttgccatctttcatagtacccattac
tcaggaggggaactgatattacaatttgggtccaatgagccatggaagaaagtgtttggc
ccagtttttttctatcttaattctttgggtgatggagctaaccctttccagtgtctatgg
gaggatgctaagcaacagatgaacgatgaagttgaaaggtggccatatgattttccagct
tcaaaggactttctgtcgcctaagcaacgaggaacagttagcggcagactattggtccgc
gaaaggtatgttacggatgataaagacgtaccgggaaatggaactctggtaggcttggca
gctccaggagttgttggatcatggcagttagaatgcaagggttaccaattctggaccaaa
gctgataatgatggctacttctctattcatggcgtacgcccagggacctataatctttat
gcatgggttcctggttttattggtgattaccgagatgtttctgaaattgttgtaactcca
ggtcttattctacttcaatctttttattttatatatgtattgtcatacataatttttggt
ttatcttatactaatgtaaattacgctgcagatggtgatgttgatgtgggtacacttgta
tatgagcctccgcgaactggcccaactctgtgggaaataggcgtccccgatcgaactgca
gcagaattttacgtcccagatcctaatccaaagtacattaacaaactctacgtcaacact
gacaggtttagacaatatggattgtgggaaagatatgcagagttatatcctgacaatgac
ttggtttacacaattggagttagcgattatagaaaggatttcttctttgctcaggttacc
aggaagacaggtaataacacatacaaaggatcaacatggcagattaggtttaacctagac
aacgtggacaagaacactacctacaaactacgagtatcacttgcaacagcacatgtttct
gaattacaagttcggatcaatgaccccgattcagagaatgatcctctatttactaccgga
cagattgggaacgacaacacgatcgcaaggcatggaattcatggactgtacaggctatac
aatgtggtcattccaagcgctcagctagtcgacgggaacaataccatatttctaactcga
gaattgagtgtcagcccctttcagggaatcatgtatgattatattcgtttagaaggcccc
caatcttctaatgacaacaataatattggatttagttcatag
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