Rosa chinensis (China rose): 112179988
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Entry
112179988 CDS
T06020
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 51
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112179988
03009 Ribosome biogenesis [BR:
rcn03009
]
112179988
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112179988
Spliceosome [BR:
rcn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112179988
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
90S particles
Helicases
112179988
Pre-60S particles
112179988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
SLFN-g3_helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
112179988
NCBI-ProteinID:
XP_024174237
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All DBs
Position
7:4952139..4956459
Genome browser
AA seq
607 aa
AA seq
DB search
MTDPISHASPMDDAKKRKRKRNRAKKPSESEVAEQPEPQIEEEAENGEGEEQAKKKEKKR
KKSKKLKGEEEAAEAEIPSETKEEEDEDAEEEEEKEEKEEKKEKKVRSGGGTGIMSTVTF
VSLNLSEKTFSAIQELGFQHMTQIQSRAIPPLLIGRDVLGAARTGSGKTLAFLVPAVELL
YNASFSPRNGTGVVVICPTRELAIQSHAVAKDLLKNHSQTLGLVIGGSARRGEAERLAKG
VNLLVATPGRLLDHLQNTKGFVYKNLKCLIIDEADRILEANFEEEMKQIINILPKNRQTA
LFSATQTKKVEDLARLSFQTTPMYIDVDDGRTKVTNEGLQQGYCLVPSAKRFILLYSFLT
KNLSKKVMVFFSSCNSVKFHSDLLRYINVDCFDIHGKQKQQKRTSTFFDYCKAEKGILLC
TDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYL
REAKVPVKEYEFNEKKLKNVQSQLEKLVANNYHLNRAAKDAYRSYLLAYNSHSMKDIFNV
HRLDLQAVASSFCFSNPPKVNLNLDSSASKFRKNMRKVDGVRHGINPNNPYGRQRGGDDD
MRQFVRH
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccaatctcccacgcatctcccatggacgacgcgaagaagaggaagcgcaag
agaaacagagcgaagaagccatcggaatcggaagttgcagagcaaccggagcctcaaatt
gaagaagaagcggaaaacggagaaggcgaggagcaggctaagaagaaggagaagaagagg
aagaagtcgaagaaattgaagggagaggaggaagcagcagaggctgaaatccctagcgag
accaaagaagaagaagatgaagatgcagaagaggaagaggagaaggaagagaaggaagag
aagaaagagaagaaggtgaggagtggtggggggactgggattatgagcacagtgaccttt
gtttcattgaatttatcggagaaaactttctcggccattcaagaattgggctttcagcac
atgactcagattcaatccagagcaatcccaccgcttttgatcggaagagatgtccttgga
gctgcaaggacagggtccgggaagactcttgcttttctggtgccagctgtggagttgtta
tataacgcaagcttttcgcctcgtaatggaactggtgttgttgtcatttgcccaactagg
gaactcgcaatacagtcccatgccgtggccaaggaccttctcaagaatcactcgcagact
cttggtttggttattggtggttcggctagaagaggagaagcagagcgtcttgcaaaagga
gtaaacctattggttgcaactcctggtcgccttcttgaccatctgcagaacaccaaggga
tttgtatataagaacttgaagtgcctcatcattgatgaagctgacaggatactggaagca
aactttgaggaagaaatgaaacaaatcattaacattctaccaaagaataggcaaacagct
ttattttctgcaacccagactaagaaggttgaagatcttgctcgcttgtccttccagaca
acgcctatgtatatagatgtggatgatgggagaactaaggtcacgaatgaagggctgcaa
caaggctattgtcttgtgccaagtgccaagagatttattctcctatattccttcctgacg
aagaatctatcaaagaaagtgatggtcttcttctcttcttgtaactcagtgaaattccac
tccgaccttcttagatacattaatgtggattgctttgatatccatggaaagcaaaagcag
cagaagaggacaagtactttttttgactactgcaaagcagagaaaggaatcttactttgt
actgatgttgctgctcgtggcttggatatccccgccgtggactggattgtgcagtttgat
cctccagatgaacccaaggaatatatccacagggttggtcgaacagctcgtggggaaggt
ggaaaaggaaatgcactacttttcctcattcctgaagagttgcagtttcttcgctatttg
agggaagcaaaagtccctgttaaagagtacgaatttaatgagaagaagctaaaaaatgtg
caatctcagctggagaagttggttgccaacaactaccatctgaaccgtgcagcaaaagat
gcatataggtcttatctattagcatataattcacactctatgaaggacatctttaacgtt
caccgactcgatctccaggcagttgcttcttcattttgcttttccaatccaccgaaggta
aatctaaacttggacagcagtgcatcaaagttccggaagaacatgcgtaaagtggatgga
gtccgacatggaatcaatcctaacaatccttatggaaggcaaagaggtggagatgatgac
atgagacaatttgtgagacattag
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