Rosa chinensis (China rose): 112180402
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Entry
112180402 CDS
T06020
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcn04131
]
112180402
Membrane trafficking [BR:
rcn04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
112180402
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_EML_2
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_VPS8
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
112180402
NCBI-ProteinID:
XP_024174713
LinkDB
All DBs
Position
7:complement(42133684..42145115)
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AA seq
1126 aa
AA seq
DB search
MYMAYGWPQVIPLEQGLCPSSQKIIYFKVINGLLLVVSPSHLELWSSSQHKVRLGKYMRD
ADSLQREGENLQAVWSPDAKLIAVLTSSFFLHLFKVQFSEKKIQLGGKQPSGLFLATISP
LLSEQVPFTDKDIRVSNIVSDSKHMLLGLSDGSLYSISWKGEFYGTYELDPVPRDGCEVI
PSSHSLDNGVASKGVPGTIPANNCVPRKSAIIQLELCFPLRLLFVLYSDGQLVSCSISKK
GLKHPESIKAEKRLGAGDAVCTSVASEQQILAVGTKRGVVELYDFAESVSLIRSVSLYDW
GYSMEDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPVVKP
VNECKFEPLMGGTSLMQWDEYGYRLYAIEERSLERILGFSFGKCCLNRGVSGMTYVRQVI
YGDDRLLVVQSEDTDELKMLHLNLPVSYISQNWPVQHVAASKDGMYLAVAGLHGLIIYDI
RFKKWRVFGDITQEQKIQCKGLLWMGKIVVVCNYIDSTNTYELLFYPRYHLDQSSLLCRK
LLLAKPMVMDVYQDYILVTYRPFDVHIFHVKLFGELTPFTTPNLELSTVRELSIMTAKSH
PAAMRFVPDQLPRDRISDNHMSNSDPLLKEPARCLILRVNGELSLLDLDDGRERELTDSV
ELFWVTCGQSEEKSNLIEEVSWLDYGHRGMQVWYPSLGVDPFKQEDFLQLDPELEFDREV
YPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLIQRDKREEALRLA
QLSAEKPHFSHCMEWLLFTVFEADISRQSANKNQSSVPKYAKNSSLLEKTCDLLRNFPEY
FDVVVSVARKTDGRHWADLFTAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQY
CALRLLQATLDESLYELAGELVRFLLRSGREYEQASTDSDRQAPSSPRFLGYFGFRSSNR
KQSLDKSSSFKEQSAHVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERY
GCARLENFASGLELIGQKLQMSILQSRFDAEFLLAHMCSVKFKEWIVVLATLLRRSEVLF
DLFQHDMRLWKAYSITLQSHPAFTEYHDLLGDLEDQLSSIGTSQEK
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggatggccacaggtcatcccacttgaacagggtttatgcccgtct
tcccagaagatcatatatttcaaggtcatcaatggcttactgcttgttgtgtctccctct
caccttgagctctggagctcttcccagcataaagtgagactgggcaagtacatgagggat
gctgattcacttcagagagaaggcgagaatttgcaagcagtctggagccctgatgccaaa
ttgatcgctgttcttacgtcctctttctttcttcaccttttcaaggtccagttttctgag
aaaaagatacaattaggagggaagcagccctctggtttatttcttgctactatatctcct
cttctcagtgagcaggtgccatttacagataaggacatcagagtgagcaatattgtaagc
gatagcaaacatatgctacttggactttctgatggatcactttacagtatctcatggaaa
ggggagttctatgggacttatgaacttgatccagttccacgtgatggctgtgaagttatc
ccatcatcacattctttagataatggtgttgcttctaaaggggttccaggaactattcct
gccaataattgcgtccccaggaagtctgctattatccaactggagctctgttttccactt
aggttactgtttgtgttatattctgatggacaactggtgtcatgttctataagtaagaaa
ggcttaaagcatcctgaatctattaaagctgagaagaggctgggggctggtgatgctgta
tgtacttcagtagcttcagagcaacaaatccttgctgttgggaccaaaagaggggttgtg
gagttatatgacttcgcagaatctgtatcactgatccgatccgtatctctgtatgactgg
ggatactcaatggaagacactggacctgtcagttgcattgcatggacgcctgataattct
gcttttgcagttgggtggaagttaagaggacttacagtttggtctgtctctggttgtcgt
ttgatgtcaacaatccgtcaaataggtttaagttcagtatcttctccggtggttaagcca
gtcaacgaatgcaaatttgaacctttgatgggtggcacctcattgatgcagtgggatgaa
tatggatataggctctatgctattgaagaacgatcgttggagaggattcttggattttcc
tttggtaaatgttgccttaacagaggagtttcaggcatgacatatgtccgtcaagtgata
tatggtgatgatcggttgcttgttgttcagtctgaagatactgatgaacttaagatgcta
catcttaaccttccagtttcttatatctcacaaaattggccagttcaacatgtagcggct
agcaaagatggaatgtacttagcagttgctggtctccatgggttaatcatatatgatata
cgattcaagaagtggcgagtgtttggagacattactcaggaacagaagattcagtgcaaa
ggtttgttatggatggggaagattgttgttgtctgcaactacattgattctactaacaca
tatgaattgcttttctatccaagatatcaccttgatcagagctcactactttgccgaaag
ttgttgcttgcgaaaccaatggtcatggatgtctatcaagattatatactagtcacatat
cgcccgtttgatgtacacatattccatgtgaaattatttggtgaattgacgcctttcact
actccaaatctagagctttctacagtacgagaactctcaattatgactgcgaagagccat
cctgcagcaatgcgttttgtcccagatcagcttccaagagatcgcatttcagataatcat
atgtctaactcagatcctttattaaaagagcctgcaaggtgtttgatattgagagtaaat
ggggagctttcacttcttgatttggacgatggacgtgaaagggagctcactgattctgtt
gaattattttgggttacatgtggtcaatcggaggaaaaatcaaatcttattgaggaggtt
tcatggttagattatggccaccgcggaatgcaggtttggtatccatctctgggtgttgac
ccttttaagcaggaggatttcttgcagttggatccggagcttgaatttgatcgtgaggta
taccctctgggacttcttccaaatgctggggtggttgttggtgtttcccagcgaatgtca
ttttcagcctgcacagagtttccgtgttttgagccaactccgcaagctcaaactatatta
cattgtcttctaaggcaccttattcagagggacaaaagggaggaagctttaagattggcc
caattatcagctgaaaaacctcatttctctcactgtatggagtggcttctgtttactgta
tttgaggcagacatatccaggcaaagtgcaaacaagaatcagagctctgtgcctaaatat
gcaaagaattcctctcttttagagaagacgtgtgatttgctcagaaattttccggagtat
tttgatgtggttgtcagtgttgcaagaaaaactgatggtcgacattgggcggatttgttc
actgctgctgggagatcaacagagttgtttgaggaatgcttccaacgcagatggtaccgc
actgctgcatgctatatacttgtgattgctaagcttgaaggtcctgctgtcagtcagtac
tgtgctttgcgtttattacaggcaacactggacgaatctttatatgaactagctggggag
ctggtgaggttcttgctgagatctggaagggaatatgaacaagcatcaacagattcagac
agacaagctccatcatctcccagattcttgggttatttcggttttcgttctagtaataga
aaacagtccttggataaaagctcttcattcaaggagcagagcgcacatgttgcttctgtg
aagaacattttagaaagccatgctagctatttgatgtcaggaaaagagctttcaaagcta
gttgcatttgtgaaaggcactcagtttgatttagtggaatatcttcagcgagagagatat
ggatgtgctcgtttggagaatttcgcttcaggacttgaattaattgggcaaaagctccaa
atgagtatactgcagagtcgatttgatgcagaatttcttttggcacacatgtgctctgtc
aagttcaaagaatggatagtggtccttgccactcttttaagacgatctgaggttctattt
gatcttttccagcatgatatgcggttgtggaaagcatatagcatcaccctgcagtcacat
cccgcctttactgaataccatgatctgcttggagatttggaagatcaactttcctccatt
ggaacttctcaagagaaatga
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