Rosa chinensis (China rose): 112180638
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Entry
112180638 CDS
T06020
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112180638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112180638
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112180638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_NOL10_N
Beta-prop_WDR41
Ge1_WD40
Cytochrom_D1
KNTC1_N
LisH
LisH_PAC1
Tricorn_N
Motif
Other DBs
NCBI-GeneID:
112180638
NCBI-ProteinID:
XP_024174961
LinkDB
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Position
7:complement(4285031..4288868)
Genome browser
AA seq
436 aa
AA seq
DB search
MESSLEQTLQDAKLYRELNSLIVAYLRDNNLHQAASAVASATMTSLNVEIPANKLVQLVA
KGLAVEKDEVIRGVSSLANDLGTLIPSGYGSMPALHTASVDFGAVQETKGSSKSFPKHET
RHLSEHKNIARCARFSPDGKFVATGSSDTSIKLFEVAKVKQMMLPEARDGPVRPVIRTFY
DHLQPINDLDFHPQSPILISGAKDNTIKFFDYSKMTAKRAFRVIQDTHNVRSVAFHPSGE
FLLAGTDHPIPHLYDINTFQCYLSANAPEIDVNGAINQVRYSATGGMYVTASKDGAIRLW
DGVTASCVRSIVGAHGTAEATSANFTKDERFVLSSGKDSTVKLWEVGTGKLVKQYLGATH
TQLRCQAVFNNTEEFVLSMDEPSNEIVIWDALTAEVVARWPSNHIGAFRWLEHSPTEAAF
VSCGTDRSIRFWKEGV
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggagagcagcttagagcagactcttcaagatgccaagctctacagagagctcaattct
ctcattgttgcctatctccgtgacaataatcttcaccaggctgcaagtgctgttgcttca
gcaacaatgacatcactgaatgtcgaaatcccggctaataagcttgttcagctggttgct
aagggccttgcagtggagaaagatgaggtgataaggggggtttcttctcttgctaatgat
ttgggtacactgataccttcgggatatggttcaatgccggctcttcatactgcctcggtt
gattttggtgctgtccaggaaacaaaaggctcgtcaaagagtttcccaaagcatgagaca
cgccatctttcagagcacaagaatattgccagatgtgcaaggtttagtcctgatgggaag
tttgttgcgactggaagttcagacacgtcaataaagctatttgaggtggcaaaagttaag
caaatgatgcttccagaggcaagagatggtcctgtgcgacctgtcatacgtacattctat
gaccacttacaacccataaatgatttggatttccatcctcagagccctattcttatatct
ggagcaaaagataacacaataaagttctttgattattccaaaatgactgcaaagagagca
ttcagagttatccaggatacacacaatgtgcgttcagtagcatttcatccttctggggag
tttcttttagctgggactgatcatccaattccacacttatatgatatcaataccttccag
tgttacctatctgcaaatgccccagaaattgatgttaatggagcaataaatcaggtcagg
tattcagctaccggtggcatgtatgttacagcttctaaagatggtgctattcgcttatgg
gatggtgttactgccagttgtgtacgttccatagttggtgcacatggcacagcagaggca
accagtgcaaattttaccaaggacgaaaggtttgttctctcttctggaaaggattctact
gtgaagctttgggaagttggcactggaaaattggttaaacaatatctaggagctacacat
acacaattaagatgtcaggctgtttttaataatacggaggaatttgtactgtctatggat
gaaccaagcaatgagattgttatctgggatgctctgacagcagaagtagtagcaaggtgg
ccatccaatcatattggtgctttccgctggctcgagcactcaccaactgaagccgcattt
gtttcctgtgggactgacagatcaatacggttctggaaggaaggcgtatag
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