Rosa chinensis (China rose): 112180984
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Entry
112180984 CDS
T06020
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112180984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112180984
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112180984
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
DUF2465
Motif
Other DBs
NCBI-GeneID:
112180984
NCBI-ProteinID:
XP_024175341
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All DBs
Position
7:5121917..5128896
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AA seq
948 aa
AA seq
DB search
MDPNFEDQSKLPELKLDAKQSQGFLSFFKTLPHDTRAIRLFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGSGSDGLSSVSVSKNMFETIARDLLLERTDHTLEIYEGSGSSWRLVKSG
TPGNLGSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGLGYVDLTKRALGLAEFLDDSH
FTNLESALVALGCKECLLPVESGKTGEIRALHDALTRCGVMLTERKKSEFKMRDLVQDLS
RLVKGTIEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYNIQRYNLDNYMRLDSAA
MRALNILESKTDANKNFSLFGLLNRTCTAGMGKRLLHMWLKQPLLDVQEINSRLDLVQTF
VEDPALRQDLRQHLKRISDIERLVHSLEKKRAGLQHVVKLYQSCIRLPYIKSALERYDGE
FSSLIKEKYSDPLALWTDDGHLNKFLALVEAAVDLDQLENGEYMIASSYDPALSALKNEQ
ESLAQQIHNLHKQTAKDLDLSIDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQRILEEYKNCQKELVNRVVHTASSFSEVFCNVAGLLSELD
VLLSFADLASSCPTPYTRPLITPSVINXFFRCGDIILEGSRHPCVEAQDWVNFIPNDCKL
VRGKSWFQIITGPNMGGKSTFIRQVGVIILMAQVGSFVPCEKATISIRDCIFARVGAGDC
QLRGVSTFMQEMLETASILKGSTDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVINAP
TLFATHFHELTALAQENAVHEPNMKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQS
FGIQVAEFANFPESVVALAREKAAELEDFTPTAVIPNDAREEVGSKRKREYDSDDMSRGA
ARARKFLKEFSEMPLDTMDVQQALQIVNKMKDDLQTEAVNSQWLQQFF
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaatttcgaggaccagagcaagcttccggagcttaaattagatgccaagcaa
tctcaagggtttttgtcattcttcaaaaccctcccccatgacacaagagctattcgattg
tttgatcgtcgggactactatactgcgcatggtgaaaatgctactttcattgcaaagacc
tattatcgtaccaccaccgctctgcgacaactgggtagtggatctgatggcctatccagt
gtgagtgttagtaagaacatgtttgaaacaattgcccgtgatcttctactggaaagaaca
gaccatactcttgagatttatgagggtagtggctcaagttggagacttgtgaaaagtgga
acgcctggaaatcttggaagttttgaagatgtattatttgcgaacaatgagatgcaggat
acccccgtggttgttgcactattacctaacttccgtgaaaatggttgtacagtggggtta
ggatatgttgatctaactaaacgagcacttgggttagctgaatttcttgatgatagccac
ttcacaaatttggaatcagctttagttgcacttggttgcaaggaatgccttctgcctgta
gagagtgggaaaaccggtgaaatcagagcattgcatgatgcattgactcgatgtggtgtg
atgttaactgagagaaaaaagagtgaatttaagatgagggatttggttcaggatctcagt
cggcttgtcaaaggaactattgaaccagttcgagatttagtttctggatttgagtttgca
cctggtgcattgggggcattgctctcttatgcagaactacttgctgatgagagcaattat
ggaaactataacatccaaagatataatcttgataactatatgaggttggattctgctgct
atgagggcacttaatatcctggaaagcaaaactgatgcaaacaaaaatttcagtttgttt
ggtcttctgaatagaacctgtactgctggaatgggtaaacgattactgcacatgtggcta
aaacagcctttattagatgtacaggaaatcaattccaggttagatttggtacaaacattt
gtggaggatcctgcgcttcgccaagatctgaggcagcatctgaaacgaatctcagacatt
gaacgactggtgcacagtcttgagaagaaaagagctggtttgcagcatgttgtaaaactt
tatcagtcatgtataaggcttccatacatcaaaagcgccctagagcggtatgatggagag
ttttcctcgctgatcaaggaaaaatattcggatccccttgcattatggactgatgatggc
cacttaaataagtttcttgctctagtggaagctgctgttgaccttgatcaactggagaat
ggagagtacatgatagcgtctagttatgatcctgctctttctgcactaaagaatgagcaa
gagtcgcttgctcagcagatacacaatttgcataaacaaactgctaaggatcttgatctc
tctatagataaggccttgaagttagataaaggcacacaatttggacatgtttttagaatc
acaaagaaggaagagccaaaaataaggaaaaagctcacaacacaattcattgtcctggaa
acccgaaaagatggagtgaaattcactaatactaagcttaaaaagttaggggatcaatat
cagagaatacttgaagagtataaaaattgtcagaaagaactggtgaaccgagttgttcac
actgcatcctctttctcagaggtgttttgtaatgtagctggcttgctttctgaattggat
gtgttacttagttttgctgatttggcttctagttgtcctactccttatactaggccactc
atcactccatcggtaatcaattagtttttcagatgtggggatattatactagaagggagt
agacatccttgtgtggaggctcaggactgggttaattttatacccaatgattgtaaactt
gtaagaggaaagagttggttccaaatcattacagggcctaatatgggtggaaaatccacg
tttatccggcaggttggtgtgattattctaatggcacaagttggttcttttgttccttgt
gagaaggctaccatttctattcgtgattgcatttttgctcgagtgggtgctggtgattgc
caactacgtggtgtttctacctttatgcaagaaatgcttgagactgcatctatactgaaa
ggatctacagataagtcactgataatcatcgacgagttaggccgagggacatcaacttat
gatggattcggtttggcttgggccatttgcgagcaccttgttgaagtgattaatgcaccc
actttgtttgcaactcactttcatgaattgaccgcattagctcaagaaaatgctgttcat
gagcctaatatgaagcaaattgttggtgttgcgaactatcatgttagtgcacatattgac
tcatcaagccgcaagttgactatgctgtacaaggttgagccaggggcatgtgatcaaagt
ttcggtatccaggttgcagaatttgcaaactttcctgaaagtgttgttgcccttgctaga
gaaaaggctgctgaattggaggatttcactcctactgccgtcattccaaatgatgctaga
gaagaggttggatccaagcgcaagagagagtatgattctgatgacatgtctagaggagca
gctcgtgcacgcaagtttttgaaggagttctctgaaatgccattagatacaatggatgta
cagcaggctttgcaaatagttaacaagatgaaggatgacttgcaaacggaggcagtaaac
agccaatggctacaacagtttttctag
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