Rosa chinensis (China rose): 112182042
Help
Entry
112182042 CDS
T06020
Name
(RefSeq) uncharacterized protein LOC112182042
KO
K24155
rabconnectin-3a
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112182042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcn04131
]
112182042
Membrane trafficking [BR:
rcn04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112182042
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
112182042
RAVE complex
112182042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR5
WDR55
Beta-prop_EML
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
112182042
NCBI-ProteinID:
XP_024176239
LinkDB
All DBs
Position
1:complement(51912467..51926352)
Genome browser
AA seq
2426 aa
AA seq
DB search
MIRRAPKNAVLVNSAKVEAIGWTGSGDGIIASGVEVVLWRRSGRSWEIAWKFKADQPQSL
VSATWSVEGPFATAAYQSKWLIEGLLTKEASKCVLVSQRDGKSEFVKSELRHPLPVSMIQ
WRPLTGKPLSRDAKHPSRHVLLTSCLDGTVRLWCEVDDGRARKVAKDINDHKTMRWSFSV
AAVIEINQALNGILGIDIYVTWAIETGGLNKASAGAKKLFSANGYEHDQLGNCEWLIGFG
PGMLVKFWAVHCLDDVSPVRFPRVTLWKTQELQVLEGGHVHRTGLSNYNDRIPLNKVVIL
RNCMSGPPVVCSLIQLLPCNSLVWSLLYTQSSNNVEDLTLNKPGMENTLSCSADGILNLD
GHAGRILQVAVHPYSCEVELAVSLDSDGLLLFWFFSTISNYILGRPTLVPTWDICGKLAT
QSSSSRYTSVRWAPAILNEVAVLLMGHAGGIDCFVVKIHQDEEEIIECHYLCTIPFTGHG
PYEDGPNSISTIPLPPTCHETLRCSKFMLLGVWMNGFQALSWEITLHTFDLSRSYCDCDF
ETGNGPESMWGFEGTFTNVRYCLKVNACSSQIPDPYIHDEVTSFAVVCQGSLMRIEKNLG
PTIDQCSSCPAYLMATGCSDGSLKLWRSRIAKLSTPNIPWELVGMFVAHKGPISTVCLSE
CGRKIATICKDFSSNTVGTLQIWDPIHLAGAGSFVLEDTISFDQELVALNWLPLGNGQLL
LGVCMLNQFRVYSLERCGGQTLLNPEKSVKKNIWVCIASTHTFPPICDFFWGPRATAVFV
HKSYFCVNSQWLFLVDKKHLANGQSNDMAKNCMGSAGGMKEDTSSIFFDCELQQFDKTLL
DESRRDCKSGTPFKTDLKKDYLLSSLFVARSQLDCAWGTKLGLWTMLEVVENLSGSLPVY
HPEALFMNIYSGNWKRAYIALRHLNDFLSSESSSGSKHYPSKSSIFVPQILLSTFLDGII
SIDSNDKGFQWSGDAVTSSSQLQRDSGQFTYDSYASNNLFSSSSTKYGLVDFVEHLEKYE
LAAITNIERMQILAIFDLLNEMTNSNSGSAYESLDEPGQRFWIALRFQQLHFVRKFGRSV
SVEELVVDSKLIGWAYHSDCQENLFGSFLPNEPSWQEMRNLGVGFWFTNTAQLRSRMEKL
ARLQYLKRRDPKDCALLYIALNRIQVLTGLFKISKDEKDKPLVTFLSRNFQEEKNKAAAL
KNAYVLMGRHQLELAVAFFLLGGDTSSAVSICAKNLGDEQLAVVICRLAEGRGGPLERHL
ISKSLLPFAIERGDSWLASLLEWELENYCQSFISMLGLQINSATETYATLSSGVAFSDPN
VGLYCLLLATKNSMRNAVGERNTAILSRWAVFMTATALKRCGLPLEALEYLSSPTTILGD
TDLGTVSDIGDFEKLNGILNPSPKNSSNWLSSNVAFRVEFLARLDLALQYLSTLVREHPS
WADTVVAPSRAISHINECENHEHVKVLGSFRQKLYTALHHLEQKFSVVPFHLISMVLLSL
YNRGLWFVGYEILHSYTSQDPDLNKSQIVISLLHPLMHKQLLKATRETSLLFSRVIAACS
ITCSKLKSDCLENNVSGESGSSSSNAWEYYFQGLILSLRSLRSALQIISVSSTEDLIMKP
LIIIDWIEYYVQFACAWLQKNSKVLFLLMQPLLITFTNGHTPYEVDLMDLKKILPQIAES
VTQYSLIDNVCIGLQGSQGTDVAHLIPEDERWQITGACLWQHISRLMKHKIGMLSYKLDE
GCISGVPDGKHFSSVPCSENLGPDDNRTEEVIGLVSLSLVKLLKTTLAHVSSYHVMRLAS
HLQHKMDNGLHVMTLVWLEEYNQSQTRGLNQHLNQDMLKLETIGEKHGSDILWDICADPK
IISESFTQEKINWSHSLDHKPSKGWNNIYRGVTTVDETEETHNHELTPKSTSANSEAGLP
SRSLFRSGHSFLSGWQKDTTATKEVSPFLNPKEIYKRNGELLEALCLNSVNQKQAALASN
RKGIIFFNWKDDMPDRDHSDYIWSEADWPLNGWAGSESTPAPTYVSPGVGLGIKQGTHVG
LGGATVGVGSLARSARDLRGGGAFGNQGYPGMRVSGLGWETREDFEEVVDPPPTVENANT
RVFSSHPSRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHC
GHRFATAALDGTVCTWQLEVGGRSNIRPTESSLCFNSHASDVAYVTSSGSIIAVAGYSSS
SVNVVVWDTLAPPTTSRASIICHEGGARSLSVFDNDIGSGSISPLIVTGGKGGDVGLHDF
RYIATGRSKRHRHTDKGEQAVKTSSNIDHHPADGNRFGEQNQNGMLWYIPKAHSGSVTKI
STIPNTSLFLTGSKDGDVKLWDAKRAKLVYHWPKLHERHTFLQPSSRGFGGVVQAAVTDI
KVVSQGFLTCGGDGTVKLVHLKDHQY
NT seq
7281 nt
NT seq
+upstream
nt +downstream
nt
atgattcggcgagctccaaagaatgcagtgcttgtcaactctgcaaaggtggaggcaatt
ggatggacgggctcaggggatggaataattgccagtggcgttgaggttgttctgtggaga
agaagtggtaggtcatgggaaattgcttggaagtttaaagcagaccaaccccagagtttg
gtctctgcaacttggtctgttgaaggaccttttgcaactgctgcttatcagagtaaatgg
ctgattgaaggattgttgactaaggaggctagcaaatgtgtgctagtaagccagcgagat
ggcaaatctgagtttgttaaatctgagctgcgacatcctcttcctgtctcaatgattcaa
tggaggccattaactggaaaacctttaagcagagatgcaaaacatccatcaaggcatgtg
ctactcactagttgcttagatggaactgtcaggttatggtgcgaggttgatgacggacgg
gcaagaaaagttgctaaggacattaatgatcacaaaaccatgaggtggtcattttctgta
gccgctgtaatcgagataaaccaggcactgaatgggattctgggaattgatatttatgtg
acgtgggccatagaaactgggggtctaaacaaagctagtgcgggggctaaaaaattattc
tctgcaaacggttatgaacatgaccagctcggtaattgtgagtggttaattgggttcggt
cctggaatgctagtgaagttttgggctgtacactgtctcgatgatgtgtccccagtaaga
tttccccgggttacattatggaagacacaagaactacaagtcctggaagggggacatgtt
cataggactggactttcaaattataatgatagaataccacttaataaagttgtgatcttg
aggaactgcatgtctggtccaccagtggtctgctctttgattcagttgttaccttgcaat
tcattggtttggtcactgttgtatactcaatcttcaaataatgtagaggatcttaccctc
aataaacctggtatggagaacactttatcatgctcagctgatgggatcttgaatttggat
ggtcatgctggaagaatcttacaagtagcagtacatccttatagttgtgaggttgaactt
gctgtctccttagattctgatggattgcttcttttttggtttttctctaccatttccaac
tatattttgggccgtccaacactagtgccaacatgggatatctgtgggaagcttgcaact
caaagttcatcttccaggtatacaagcgtgaggtgggcaccggcaatactaaatgaagta
gctgttcttcttatgggacatgctggaggaattgattgctttgttgtaaaaattcatcag
gatgaggaagaaattatagaatgtcactacttatgcactataccttttacaggtcatggt
ccttatgaggatgggcccaacagtatctctacaattcctttgcctccgacttgtcatgaa
actctaagatgtagtaaatttatgcttttgggtgtctggatgaatgggtttcaagctctt
tcatgggaaatcactttacatacttttgatttatccagaagctactgtgactgtgatttt
gagacgggaaatggtcctgaaagtatgtggggatttgaaggtactttcaccaatgtaaga
tattgtctaaaagtaaacgcttgctcatcgcagatacctgatccatacatccatgatgag
gttacaagttttgctgtggtctgtcagggtagtttgatgcgtatagaaaaaaatttgggt
cctactattgatcaatgctctagttgtcctgcttatttaatggcaacaggctgctctgat
ggttctttgaaattgtggaggagtagaattgctaaactatcaactcctaacattccatgg
gaacttgtgggtatgtttgtggcacataaaggccctattagcactgtatgcttgtctgaa
tgtggtaggaagattgcaaccatctgcaaggatttttcttcaaatacagttggcactctt
cagatatgggatcctatacatcttgcaggtgcagggtcatttgtgttagaagatacaata
tcctttgatcaagaacttgttgctttgaattggctacctttgggaaatggtcagttacta
ctgggagtttgcatgctgaatcagtttcgagtatattctcttgagcgttgtggtggtcaa
actttgttaaaccctgaaaaatcagtgaaaaagaacatctgggtctgcattgcctctact
catactttccctcccatttgtgacttcttttggggacccagagcaacagctgtctttgtt
cataagagttacttttgtgtaaatagtcagtggttgttccttgtagataagaaacatctt
gctaatggtcagtcaaatgacatggcaaaaaattgcatgggttctgcaggtggaatgaaa
gaagacactagttcaattttctttgattgtgaacttcaacaatttgataaaacattactt
gacgagagtagaagagactgcaagtctggtacaccattcaagactgatttgaaaaaggac
tatctattgagcagcttgtttgtagcaaggtctcaattggattgtgcttggggtaccaag
ctaggtttatggacaatgcttgaagtggtggagaatttaagtggatctctgccagtttac
cacccagaggccctctttatgaatatctattcaggaaattggaagcgcgcgtatattgca
ttgaggcatctcaatgattttctctcttctgagtcttcttctgggagcaagcattaccct
tcaaagtcgagcattttcgttccacagattttgttgtcaacttttcttgatgggattatc
tcaatagattcaaacgataaaggatttcaatggagtggtgatgcagtcacttcatcttct
cagttgcagagagactctggtcagtttacatacgactcgtatgcttccaataatttgttc
agttcatcttcaacaaaatatggacttgttgactttgttgagcatctggagaagtatgaa
ttagcagctataaccaacattgagaggatgcagattcttgctatctttgatcttctcaat
gaaatgactaattcaaactctggttctgcgtatgaaagtctcgatgaacctggacagagg
ttctggattgcattgaggtttcagcaactacattttgtccggaagtttggtagatcagta
tccgtggaggaattggttgtggactctaagttgattggatgggcctaccactctgattgc
caggaaaatttgtttggatctttcctacccaatgaaccgtcttggcaagaaatgcggaat
ttaggtgtaggattttggtttacaaatacagcacaattgcgttcaaggatggagaaacta
gcaaggttgcaatatctgaagaggagggatcctaaggattgtgcattgctatatattgca
ctgaatagaattcaagttctgaccggacttttcaaaatcagcaaggatgagaaggacaag
cccttagtcacatttctttcacgcaattttcaggaagagaaaaataaggcagctgccttg
aagaacgcatatgtcttgatgggtaggcatcaactggagttggctgttgctttctttctg
cttggaggtgatacttcttctgctgtcagtatttgtgcaaagaaccttggggatgaacag
cttgcagttgtaatttgccggcttgctgaagggcgtggtggaccattagagagacaccta
atttcaaagtctctactaccatttgcaattgagaggggtgactcctggttagcaagcctt
ctggagtgggagctagagaactactgtcaatcttttataagcatgcttggactccagata
aattctgcaactgagacgtatgcaactttgtccagtggtgttgctttttcagacccaaat
gttggtctctattgtctattgctagcaaccaagaacagcatgaggaatgctgtaggggag
cggaatactgcaatcctgagtaggtgggcagtattcatgacagccactgccttaaagaga
tgtggacttccacttgaagctttggagtacctttcatctcccacaaccattcttggagac
acagatctagggactgtatcagatattggggattttgagaagctaaatggaattctgaat
ccttctccaaagaattcttcaaattggttatcaagtaatgtggcattccgtgtggagttc
cttgccagattagatttggcacttcaatacttatcaacattggtaagagagcatccaagt
tgggcagatactgttgttgcaccttccagagctatttcacatataaatgagtgcgagaat
catgaacatgtaaaagttctggggagtttccgccagaaattatacacagcacttcatcat
ttggagcagaagttttcagtggttccttttcatctcatcagcatggtcttgctctcactg
tacaatcgtgggctatggtttgttgggtacgaaatattacattcatatacttctcaagat
ccagatctcaataaaagccaaatagttatatccctattgcatcctcttatgcataagcaa
cttttgaaggctaccagagaaacttctcttttattttcacgcgttattgctgcctgcagt
ataacttgctctaaactgaagtcagattgtttagaaaacaatgtgtctggtgaaagtgga
tcttcaagctcaaacgcttgggagtattactttcaaggtcttatcctgtcacttcggagt
ttaaggagtgctttgcaaattatttctgtctcatctactgaagacctcatcatgaaaccc
cttatcatcattgattggattgagtattatgtacagtttgcttgtgcatggcttcaaaaa
aactcaaaagttctcttcctattaatgcaaccacttctgatcacatttaccaatgggcat
acaccttatgaagttgatttgatggatctgaagaaaatcctccctcagattgcagaatcg
gtgacccaatattctttgattgataatgtatgcataggccttcagggttctcaaggtaca
gatgtagcacatttaattccagaagatgaaagatggcagatcacaggggcttgtttgtgg
caacacatatccagactaatgaaacataagataggtatgttatcttataaacttgatgaa
ggctgtatttctggtgttcccgatggaaaacatttctcatcggtgccttgctctgaaaat
ttgggtcctgatgacaacagaactgaagaagtgattgggttggtttcattgtccttggtt
aaattattaaagaccactcttgcacatgtttcttcttatcatgtgatgcgtctagcatca
catctgcagcataagatggataatgggttgcatgtaatgactcttgtttggttagaagaa
tataaccagtctcagaccagaggcctcaatcagcatttgaatcaggacatgctcaaattg
gagacaataggtgaaaaacatggatctgacatattatgggatatttgtgcagatcctaaa
ataatatctgagagtttcacgcaggaaaaaataaactggtctcactcccttgatcataaa
ccgtctaaaggatggaataacatatatagaggcgtcacaactgtagatgagactgaggaa
actcataaccatgaacttacgcctaagagtacttctgccaatagtgaagctggattacct
tctagaagtctatttcgcagtggccactctttccttagcggatggcagaaagatacaacc
gctacaaaggaggtctcacctttcctgaacccaaaagaaatatacaagagaaatggggag
cttttggaggcattgtgtctcaactctgttaatcagaaacaagctgctcttgcaagcaac
cgaaagggcatcatattttttaattggaaagatgatatgcctgatagagatcattcagac
tatatctggtcagaggctgattggccactgaacgggtgggctggttctgaatcaacgcca
gctccaacatatgtatctcctggtgttggtcttggaatcaaacaaggaacacacgttgga
ctgggtggagcaactgttggtgtaggatctttggcaaggtcagcaagagacttgagaggt
ggaggagcatttgggaatcaaggttatcctggaatgcgtgtgtctggtttaggttgggag
actcgagaggactttgaggaagttgttgatccaccacctactgttgagaatgcaaacaca
agggttttttccagtcacccatcaagacctttcttcttggttggttctagcaatacacac
atttacttatgggagtttggcaaagacaaagctactgcaacttatggagttctgcctgct
gcaaatgtccctccaccttatgctctggcatcgatatctgctttgcagtttgatcactgt
ggacacagatttgctaccgctgccttagatggaactgtatgcacatggcagctggaggtg
ggaggaaggagtaatattcgtcctacagaatcatctctatgctttaacagtcatgcatcg
gatgttgcttatgttacatcaagtggatcaatcattgctgtggcaggatatagctccagt
agtgttaatgtggtcgtatgggatacattggctccacctactacctcacgagcttccatt
atttgtcatgaaggtggggcgcgctctctttctgttttcgataatgacataggaagtgga
tctatctcaccccttattgtgactggtggtaaaggtggtgatgttggacttcacgacttc
cggtatattgctactggaaggagtaaaaggcacaggcatactgataaaggtgaacaagct
gtgaagacatcatcaaatattgatcatcatcctgcggatggtaacagatttggggaacaa
aatcagaatgggatgctgtggtatataccaaaagctcactcagggagcgtcaccaagata
tccacaattccaaataccagtttgttcttaacgggaagcaaagatggagatgttaagctt
tgggatgccaagagagctaagttagtatatcactggccaaaattgcatgaaaggcacaca
tttttgcaaccaagctctcgaggttttggtggagtagttcaggctgctgtcaccgacata
aaagttgtttcacaaggttttcttacatgtggtggagatggaactgtaaagctggttcac
ctcaaagaccaccaatattag
DBGET
integrated database retrieval system
