Rosa chinensis (China rose): 112182279
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Entry
112182279 CDS
T06020
Name
(RefSeq) LOW QUALITY PROTEIN: probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00040
Pentose and glucuronate interconversions
rcn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112182279
Enzymes [BR:
rcn01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112182279
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112182279
NCBI-ProteinID:
XP_024176491
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Position
1:53900581..53906037
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AA seq
496 aa
AA seq
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MLPTTCILLICLLSSLCSLTLASLNLNLTLPHQHPXPEAVAQEVQRRVNASLSRREMLSL
KDQQCAVGNPIDDCWRCNSNWADDRQKLADCGIGFGQDAMGGKGGQIYVVTDSSDRDPAN
PTPGTLRHAVIQTEPLWIIFSADMTIKLKVELIVNSFKTIDGRGVSVHVTGGGCITLQYV
SNVIIHNIHVHHCKPAGNTNVASSPTHVGWRGKSDGDGISLFSARKIWIDHCSLSYCTDG
LIDAIMGSTGITISNNHFAHHDEVMLLGHNDKYSPDTGMQVTIAFNHFGEALVQRMPRCR
LGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPMNQNAKEVTKRVDTNEGDWADWN
WRTEGDIMVNGAFFVPSGAGMSTQYAKASSLEPKSVGLIDRLTVTAGVFGDPRDSSRSES
YPGYSGGGTVTDGTTNTGSGGSSGGDDYFGMIFGNTAQPSSSANAFLLSLLIILILYVTT
SHGGVLSLPLFLTLLL
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctaccacctgcattctcttaatatgcctcttgagctctctctgttccctcacc
ttagcttctctaaacctcaacctcaccctccctcatcaacaccctnaccctgaagctgtg
gctcaagaagtacaaaggagagtcaatgcctccctttcccggcgcgaaatgctgtccctc
aaggaccagcaatgcgccgtcggcaaccccatcgacgactgctggcgctgcaactccaac
tgggccgacgaccgccagaagctcgccgactgcggcatcggcttcggccaagacgccatg
ggcggcaaaggcggccagatctacgtcgtcaccgactcctccgaccgcgaccccgccaac
ccaactccgggcactctccgccacgccgtgatccaaaccgagcccctctggatcatcttc
tccgccgacatgaccatcaagctcaaagtcgagctcatcgtcaacagcttcaagaccatc
gacggccgcggcgtcagcgtccacgtcaccggcggcggatgcataaccctccagtacgtc
tccaacgtcatcatccacaacattcacgtccaccactgcaagccggccggcaacaccaac
gtcgcctccagccccacccacgtcggctggcgcgggaagtccgacggcgacggcatctcc
ctcttcagcgcccgcaaaatttggatcgaccactgctccctgtcctactgcaccgacgga
ctcatcgacgccataatggggtccaccggcatcacgatttccaacaaccactttgcgcac
cacgacgaggtgatgcttctcggccacaacgataagtactcgccggacaccgggatgcag
gtgacgattgcgttcaaccacttcggggaggccctggtgcagcgtatgcctcggtgcagg
ctcgggtatattcacgtggtgaacaatgacttcacgcagtgggagatgtacgccatcggc
ggcagcgccaaccccaccattaacagccaggggaatcggtacactgctccgatgaaccag
aacgccaaggaggtgacgaagcgcgtggacacgaacgaaggggattgggcggactggaac
tggagaacggagggggacataatggtaaatggagccttctttgtgccatcaggtgcgggc
atgagcacccaatacgctaaggcctcgagcctcgagcccaagtcggtgggtctcattgac
cgcctcaccgtcaccgccggtgtcttcggcgacccaagggacagtagtaggagcgaatca
taccctggatacagcggcggtgggaccgtaaccgatggtaccaccaacaccggcagtgga
gggtccagcggcggtgatgactattttggaatgatattcgggaacactgctcaaccatca
tcatctgcaaacgcattcttgttgtctcttctaattatcttaattttgtatgttaccacc
agccatggtggtgtattatcattaccattattcttaacattattattataa
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