Rosa chinensis (China rose): 112182464
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Entry
112182464 CDS
T06020
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112182464
09124 Replication and repair
03420 Nucleotide excision repair
112182464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112182464
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112182464
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112182464
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112182464
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112182464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
112182464
NCBI-ProteinID:
XP_040368641
LinkDB
All DBs
Position
1:complement(33744418..33752933)
Genome browser
AA seq
769 aa
AA seq
DB search
MGHGEKGRRNKKLKVSAKESTHVENDDGYYSGREEDDNVRHGERKTRDFTKLELKPDHPN
RPLWACPDGRIFLETFSALYKQAYDFLIAIAEPVCRQEWMHEYNLTPHSLYAAVSVGLET
ETIISVLNKLSKTKLPKEIIDFIHGSTANYGKVKLVLKKNRYFVESPYPEVLKTLLKDNF
IAESRITPEGPHGNEDFTISTTMGEIGAGPSDLLNEAELAAVAEEKETHAFEIDPSKVEN
VKQRCLPDSLNYPMLEEYDFKNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGI
IVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSK
ERVRGNAGVVVTTYNMIGFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAEMFRNVIK
FTKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTK
EFFLEYLKRENSKKKQALYVMNPNKFRACEFLIRFHEEHRGDKIIVFADNLFALTEYAMK
LRKPMIYGATSHAERTKILQAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRR
QEAQRLGRILRAKGRPQDRIAGGKEEYNAFFYSLVSTDTQEMYFSTKRQQFLIDQGYSFK
VITSLPPPESGSDLSYHRLDDQLALLSKVLSVGDDKVGLETLEEDPDEIALQKARRSTGS
MTLMSGAKGMVYMEYSTETQKHKHGKAQIKSTKPRDPAKRHYLFKQRRG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggtgagaaaggccggcgcaataaaaaactcaaagtctctgccaaggaaagc
acacacgtggaaaacgatgacggctattacagcggtcgtgaagaagatgacaatgtccgc
catggtgaaaggaaaacgagagactttaccaaactagaattgaagcctgaccaccctaat
cggcctttatgggcttgtccagatggccggatattcctggaaactttctcggctttgtac
aaacaagcttatgatttcctcattgccattgcggaacccgtttgcaggcaagagtggatg
cacgagtataacttgaccccgcattctttatatgcggctgtctcagttggccttgaaacc
gaaacaattatttctgttctaaataagctgtcaaagaccaagctccccaaagagattatt
gatttcatacatggttctactgctaattatggcaaagtgaagctcgtgcttaagaagaat
cggtattttgtcgagtcgccatatccagaggtactgaagacattgcttaaggacaacttt
attgcagaatcaaggattactcctgagggtcctcatggaaatgaagattttacaattagc
acaacgatgggtgaaattggagctggtcctagtgatttgctaaatgaagcagaactggca
gctgtggctgaagaaaaagaaactcatgcatttgaaattgatccttcaaaggttgagaat
gttaagcaacgttgcttgccagattctttgaactatcctatgttggaggagtatgacttc
aaaaatgatacagttaaccctgatcttgatatggaactaaagcctcaagcgcaaccccga
ccgtatcaagagaagagcttgagtaaaatgtttgggaatgggagggcaagatctggcatt
attgtactgccttgtggtgctggaaaatctctagttggtgtttctgcagcctctcgaata
agaaagagctgcctttgtttagcaacaaatgccgtttccgttgatcagtgggcttttcag
tttaagttgtggtcaactatccgagatgaccaaatttgtcgtttcacatctgatagtaaa
gaaagagtccgtggaaatgctggggtggttgtgacaacatataacatgattggttttggt
ggaaagaggtccgaagaatctgaaaagattattgaagaaataagaaacagagaatgggga
ttgcttcttatggatgaggtgcatgttgttcctgctgaaatgtttcgaaatgtcatcaaa
tttactaaatcacattgcaagcttgggctcacggccacactggtgagagaggatgagaaa
atcacagatctgaacttccttattggtcccaaattgtatgaagcaaactggttggatttg
gttaaaggcggatttattgctaatgtacagtgtgctgaagtatggtgtcctatgacaaaa
gagtttttcctggaatatttgaagagggaaaactcaaagaaaaagcaggcactttatgta
atgaatccaaataagtttagggcatgcgagtttcttatacggtttcatgaagagcaccgt
ggtgataaaattattgtatttgccgataatctatttgcacttacagagtatgcaatgaaa
cttcggaaacctatgatctatggtgctaccagccatgctgagaggacaaaaattctacaa
gctttcaaaacaagtcgggacgtaaacaccgtattcctgtctaaggtgggtgataattcc
atagacattcctgaggcaaatgtgattattcagatctcatcacatgctggttcaagacgt
caagaagcacagcgtcttggacgtattttgagggctaagggtagacctcaggatcggatt
gcaggaggtaaagaggagtacaatgcgttcttttattctcttgtgtcgactgatactcag
gagatgtacttttcaactaaacgccagcagtttttgattgatcaaggttatagttttaag
gttattacaagcttgccccctcctgaatcaggatctgatttgagctatcaccgtcttgat
gaccaactggcactactttcaaaggtgttgagtgttggtgatgataaagttggcttagag
acactagaagaagaccctgatgagattgcccttcagaaagcacgtcgctcaacaggatcc
atgactttgatgtcaggcgccaaggggatggtttacatggaatatagtactgaaacgcag
aaacacaagcatggcaaagcacagattaagagtactaagcccagggatccggcaaagaga
cattatttgtttaaacaacgccgtggctga
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integrated database retrieval system
