Rosa chinensis (China rose): 112183510
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Entry
112183510 CDS
T06020
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112183510
09124 Replication and repair
03420 Nucleotide excision repair
112183510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112183510
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112183510
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112183510
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112183510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
112183510
NCBI-ProteinID:
XP_024177661
LinkDB
All DBs
Position
2:4135755..4137011
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AA seq
418 aa
AA seq
DB search
MSKGELIKFARYKASVIDPGTLGLLTITENKIEFCADPKYATKLFEVGLEHIKGHQHTKE
GSHKPAWLNLNTDKDVTRTRYIFELYSYPDLHECVEFLRKLLLEFSCRKVGYKSSMIFDT
KPSRKVTFTEEIKHRIFALRPAVHQAYLNSVVPGKTKEHDFWRKYFNAEQVRMYSAKNVV
AAEAEATEDEEKAVFLKDDELVAREARRKIRRVDPTLDMVADQRDDHTHLPLHGIFHHDI
NDEEVQNNNQKRWRTLRQDVNRQGAVVLQGIRAVEEEFTRRRSKQEYSDDESSDVQQEKR
LDRISWITEIEDLEEPHSVAPLCFDTDLWDYSELASANAGLKTLDDSSTGSEQNKKVVTA
QEAYGSLRESISEIKSIGLSNATVGLKFNVEDFLKEVGKTSGIKDRPATDMDMLPKTK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagggtgaactaattaagtttgcaaggtacaaggcttcagtcatagaccccggc
actcttggacttttaaccattacagaaaataaaattgagttctgtgccgatcccaaatat
gccacaaagctatttgaagtggggcttgaacatattaaaggacatcaacacaccaaagaa
ggatcacataaaccagcctggctaaatctcaacacagataaggatgtgactaggactagg
tacatctttgagctctatagttatccagatcttcatgaatgcgttgaatttttacgcaag
ttgcttcttgagtttagctgtagaaaagttggttacaaaagttcgatgatatttgacacc
aagcctagtagaaaggttacatttactgaagagattaagcaccggatatttgctctgagg
ccagctgtgcaccaggcatatcttaacagtgtagttcccggaaagaccaaagagcatgac
ttctggagaaagtatttcaatgctgaacaggtccgaatgtatagtgcaaagaatgttgtt
gcggctgaagcagaagctactgaggatgaggaaaaggcagtttttttgaaggatgatgaa
ctagttgcaagggaagctcgtaggaagattcgacgtgttgatccaactttggatatggta
gctgatcaaagggatgatcatacacatcttcctttgcatgggatctttcaccacgacata
aatgatgaagaagtgcagaataataatcaaaagaggtggaggactttgcggcaagatgtt
aacagacaaggagctgttgttcttcaaggaataagagctgtggaagaggaatttacacgg
cgtaggtcaaaacaggaatattctgatgatgagagtagtgacgtgcagcaggagaagaga
cttgataggattagttggataactgagatagaggacctggaagaacctcattctgttgct
ccattatgttttgatacggatctttgggactactcggaactagctagcgctaatgcaggg
cttaaaactttggacgattcaagtactggaagtgaacaaaataaaaaggtggttactgct
caggaagcatacggctctttgagggagtctatatctgaaattaagagcattgggctgagc
aatgccacagttggactgaaattcaatgttgaggattttctcaaggaagtaggaaaaact
tcaggtatcaaggatcgacctgcgacagacatggacatgttgcccaaaaccaagtaa
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