Rosa chinensis (China rose): 112183948
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Entry
112183948 CDS
T06020
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112183948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112183948
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112183948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
112183948
NCBI-ProteinID:
XP_024178035
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All DBs
Position
2:complement(67808042..67815850)
Genome browser
AA seq
1303 aa
AA seq
DB search
MDYRPVSSRTRSKRDKAIIELHWQMKINSGVSPATRDKKMRRSNQASVSHMGESSSRRQS
FEWVAGHVEFLENQQNDDDSESVIKRSGKQGKGKGVAVGVKRKRSLGLDVSADSNKDGCH
CRAVSDNGLEVVDLVDSPDDNEVLVSKGKEGGVGVDVDVDGVSDDESDEDVDVDGVSDDE
SDEDVSSAEEDDSSDESVFSIEEENECISLSVEDSSEQENEEESEVTEKNEKACKGESVE
VDWKGKINADGDVLHYCSAHDTDTDVRSEQEWKEESLGIHPKGKINADGDDLHSSSDHDI
SDRRAKLGEAESVLVTSCTKKKSTRVPKQKRLPTIAFEAPKVECLPLRFSFAKQPTIPEK
PDYEREVDALLAEYKFVIAYENASADSKAKDGYFTRSDNNRNHFNDVTYGGSPETAIDNG
RTIGLQTAFNENEAAKGHDDARSKNRIHDFDDETHGGASESGFNKGSKFDVHRACKKGEE
AKGNNFSRSFNSRKDDKDETYGGSRPETYKKRERVGNLTNKKGITAPKDCNAFMILVDSI
YDKGEVSGELPPFGDESPQDEAPRDEPLPLFFTLGHPPSPAPEKSASEIELENLFEEYDF
VQMSEEIGSTDSKLVETNDSVLPGTEVTQYMLCSQGKHDLILDEEIGLICQFCPHVHREI
KYIVPDFAPNPYGKAGKRFYEEDNRSVLDDLQCNDPDNCGFSSDAHTEGTVWDLIPGMKG
DMYPHQREGFEFIWSHLAGGIQLGKLAKPSACGGDGCIISHAPGTGKTRLTIIFIQSYMN
FNPSSRPLIVAPRTMLLTWEEEFKKWGFDIPFHNLNNPDFTGKEDEAARNLVKDGKSSEM
INLTRIVKLKSWAEKRSILGISYSLFEQICGASTKKGKHPLSPRRKLEAEQMWKVLVEFP
GLVVFDEGHNPRNDQSYSWNALLKLKTRRRILLSGTPFQNNFEELYNTVRLVRPEWTTNP
TCLGAFDKKQRTWGQMRGRKGNAGKGQFADDNTKRAKEVRAMISPFVHVYKGTILQDKLP
GLRNSVVVLQPTALQQRCSDRIQLIKNPFKYERIEAKVTIHPSLLLNENRSMFLEEDKYS
GDWERLTEIKLNPEGGVKARFAVDLIRLCQAMNERVLVFSQWVDPLLLIRDLLKSQFQWV
EGEEVMYMDGKCDAKQRQSSMSYFNDPSTKAKVMLATTRGCNEGISLVGASRVVLLDVAW
NPSVERQAISRAYRLGQKKIVFIYHLLMAGAREEDKYNRQVEKYRLSELVFSCSDTEADA
KKIPASVAEDKILEEMVQHQKLKHIFQKITLLNEASYLDEEFV
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggattataggcctgtatcaagcagaacaaggtcgaagagagacaaagctatcattgaa
cttcattggcaaatgaaaattaacagtggggtgagtccagccacaagggataagaaaatg
aggaggtccaaccaggcttctgtttctcatatgggtgagtccagttctaggagacagagt
tttgagtgggttgctggtcatgtggaattcctggaaaaccaacagaatgatgatgattca
gagagtgttattaaaagaagtgggaaacagggaaaggggaaaggagttgcggttggtgtg
aagagaaagaggagtttaggattagatgtgtcggctgatagcaacaaagatggttgccat
tgtagagctgtttcggataatggtctggaagttgtcgatttggtggatagtcctgatgat
aatgaggtactagtttctaaaggtaaagagggaggagtaggagttgatgttgatgttgat
ggtgtgagtgatgatgaaagtgatgaggatgttgatgttgatggtgtgagtgatgatgaa
agtgatgaggatgtttcatcagcagaggaagatgacagtagtgacgaaagtgtgttctct
atagaggaggaaaatgaatgtatttccttatcagttgaagatagtagtgagcaggaaaat
gaagaggagagtgaggtgacggagaagaatgagaaagcgtgcaagggagaaagtgttgag
gttgattggaagggaaagataaatgctgatggtgatgttctgcattattgttctgctcat
gatactgacactgatgtcagaagtgagcaagagtggaaggaagaaagtcttggaattcat
ccgaagggaaagattaatgctgatggggatgatctacattcttcttctgatcatgatatc
agtgacagaagggcaaaattgggggaggcagagagtgtgttggttacctcctgtactaaa
aaaaagagcacgagggtcccaaaacagaaaagattacctaccattgcatttgaagcccca
aaagttgaatgtctccctttgagattcagttttgctaagcagccaactattcctgagaag
ccagattatgagagagaagtagatgcccttcttgctgaatataaatttgttatagcatat
gagaatgcttctgctgattctaaggctaaagacggctactttacaagatcagataataac
agaaatcatttcaatgatgtgacttatggtggtagtccagaaacggcaattgataatggg
agaacaattggtttgcagacggctttcaatgagaatgaagctgccaaaggacatgatgat
gcaaggtcaaagaataggatacatgatttcgatgatgagacgcatggtggtgcttcagaa
tctggttttaataaaggcagtaaatttgatgtgcacagggcttgcaagaagggtgaagag
gccaaaggaaacaacttttcaaggtcctttaattcacgaaaggatgacaaagatgagaca
tatggtggtagtcgtccagaaacatataagaagagagaaagggtggggaatcttaccaac
aaaaagggcattacagcaccaaaagattgcaatgcctttatgattcttgtagattcgatt
tatgacaagggagaagtgtcaggggaactacctccgtttggggatgaatccccccaagat
gaagctccaagagatgagccccttccattgtttttcacgcttggtcatcctccaagtcct
gcaccagagaagtcagcttctgagatagaactagaaaacctttttgaagaatatgacttt
gtccaaatgtctgaagagattggttccactgattctaaactggttgaaactaatgactca
gtccttcctggtacagaagttactcagtatatgctttgtagtcaagggaaacacgatctt
atacttgatgaagaaattggactcatatgccaattctgccctcatgtgcatcgggagatc
aagtatattgtaccagactttgctccaaacccttatggaaaagctgggaagagattttat
gaagaagacaaccggtctgtccttgatgatcttcagtgtaatgaccctgacaattgtggc
tttagttcggatgctcatactgaaggcacagtgtgggacttgatccctggtatgaaaggt
gatatgtaccctcatcagcgtgaaggtttcgaatttatttggagtcacttagctggtgga
attcagcttggaaagttggcaaaacctagtgcttgtggcggtgatggatgcattatatca
catgcacctgggactgggaagactcgtttgactattatctttatccagtcgtacatgaat
tttaacccatcaagcaggccactcattgttgctccacgtaccatgcttcttacttgggaa
gaggagtttaagaaatggggttttgacattccctttcacaatcttaacaatcctgacttc
actggcaaagaggatgaagcagctcgcaatcttgtgaaggatggtaagagttcagaaatg
ataaacttgacccgtattgtgaagctaaagtcctgggcagagaaaagaagcatcttgggt
attagttattcactgtttgagcagatttgtggagcttctaccaagaaaggaaaacatcca
ctttctccaagacgaaagctcgaagctgagcagatgtggaaagtccttgttgaatttcct
ggtcttgtagtatttgacgaagggcacaatcctcgcaacgaccagagttattcatggaat
gctcttttaaaactgaaaacaagaaggcgcattctcctctctggtactccttttcagaat
aattttgaggagctctacaatacagtccgcttggtgaggccagaatggaccaccaatcct
acctgccttggagcttttgacaaaaagcaacggacttggggccaaatgcgaggcagaaaa
ggcaatgctgggaaaggccaatttgctgatgataatacaaaacgagctaaagaggtcaga
gctatgatttccccatttgtgcatgtttacaaaggcaccatactgcaagataagcttcct
gggttaaggaactcagttgttgttttacagccaacagctttacagcagagatgttctgac
agaattcagctgataaaaaatccatttaaatatgaacgaatagaggctaaagtaactatc
cacccttctctcttgcttaatgaaaatcgctctatgtttcttgaggaagacaagtattca
ggtgactgggaaaggctaacagaaatcaagttaaatcctgaaggtggagtgaaggcaaga
tttgcagttgatctcattcggctttgtcaagctatgaatgaaagagttttggtattcagt
cagtgggttgatccattgctcttaataagggacctgctcaaatctcagtttcagtgggtg
gaaggagaggaggttatgtatatggatggaaaatgtgatgcaaagcagcgccaatcatca
atgagttatttcaatgatccatccaccaaagcaaaggttatgttagctacaacaagaggt
tgcaacgaaggaataagtttagttggagcttcaagggttgtactgcttgatgttgcatgg
aacccttctgttgagagacaagctatatcccgagcataccgattgggacagaaaaaaatt
gtgttcatctaccatctcctcatggctggggcaagagaagaggacaaatacaaccgacaa
gttgagaagtatcggttgtctgaattggtattttcttgttcggatacagaagctgatgcc
aagaaaatcccagcttcggtcgcggaggacaagattttggaagagatggttcagcaccag
aaactgaagcatatatttcaaaagataacattactgaatgaagcttcatatttggacgaa
gaatttgtatga
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