Rosa chinensis (China rose): 112184072
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Entry
112184072 CDS
T06020
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00040
Pentose and glucuronate interconversions
rcn01100
Metabolic pathways
Module
rcn_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112184072
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
112184072
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
DUF7460
NosD
Motif
Other DBs
NCBI-GeneID:
112184072
NCBI-ProteinID:
XP_024178131
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Position
2:complement(29278092..29279670)
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AA seq
401 aa
AA seq
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MVQLTSCFCTLAFILLHILYQPSIAAAADETATIYSVLSFGAKRNGVTDSTQAFLDAWAA
ACASLDSAEINVPKGRYLLNSMTFKGDCKSAQITFRIDGTLVASPDYRVLGQANNWLGFE
GVSGVTIIGGTLDAKGSALWACKLSSKASNCPDGATSLSFTNSKNIRVEGLMSLNSQMYH
IVINGCQDVLIQGVKVIAAGNSPNTDGIHVQFSKNVAIFNTSIKTGDDCVSIGPGTKDLW
MEHISCGPGHGISIGSLAKDLEEEGVQNVTVKNAIFKGTQNGVRIKSWARRSNGFVQGVQ
FLDVEMVDVQNPIVIDQNYCPHNLNCPAQVSGVKISDVLYQNIRGTSATAVAVKFACSAA
NPCSGIRLKNVNLACRNQAVQSYCTNAIGKAYGTVQPNSCL
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagctaacaagttgtttttgcacacttgcattcattcttctacatatcctatac
cagccatctatcgctgctgctgctgatgagaccgcaactatttacagtgtcttaagcttt
ggagctaaacgcaatggagtaactgattcaacccaagcttttcttgatgcatgggctgct
gcctgtgcctccctagattcagccgagataaatgtaccaaaagggaggtatttgctcaac
tctatgacctttaaaggtgactgcaagagcgcacagattactttccggattgatggaacg
cttgtagcttcacctgattaccgagtcctaggccaagccaacaattggcttggttttgaa
ggagtcagcggggtaaccattatcggaggaacacttgacgccaagggttctgcattgtgg
gcttgcaaattgagctccaaagcctccaattgtcctgatggcgccacgagtttgagtttt
acgaactccaaaaacattagagtcgaggggctaatgtcattgaacagccagatgtaccac
attgtcataaacggctgccaagatgttctcattcaaggcgtcaaagtcattgctgctggc
aatagcccaaacaccgatggcatccatgtccagttctcgaaaaatgttgcaatcttcaac
acctccatcaaaactggggacgattgtgtctctattggtcccggcaccaaggacttatgg
atggaacacatatcatgcggtcctggccacggcattagcattgggagcctagccaaggac
ttggaagaggaaggggtacaaaatgtaacggtcaaaaatgcgatttttaagggcacccaa
aatggtgtgaggataaagtcttgggcgagacgtagcaacgggtttgtccaaggtgtccaa
tttcttgacgttgaaatggttgatgttcaaaaccctattgtaattgaccaaaattactgc
ccacacaaccttaactgccctgctcaggtatcaggcgtgaaaattagtgatgtattgtat
caaaacattcgaggaacatcagcaacagcagtcgcagtaaaatttgcttgtagtgcagca
aatccttgcagtgggataagactcaaaaacgtgaatctggcttgccgtaatcaagctgtg
caatcatattgtacgaatgcaatcggaaaggcttacggcactgttcaaccaaacagttgt
ttgtag
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