Rosa chinensis (China rose): 112185849
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Entry
112185849 CDS
T06020
Name
(RefSeq) LOW QUALITY PROTEIN: myb-like protein X
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03015
mRNA surveillance pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112185849
09122 Translation
03013 Nucleocytoplasmic transport
112185849
03015 mRNA surveillance pathway
112185849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112185849
03041 Spliceosome [BR:
rcn03041
]
112185849
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112185849
Spliceosome [BR:
rcn03041
]
Complex C
Other components
EJC/TREX
112185849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
112185849
NCBI-ProteinID:
XP_024179941
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All DBs
Position
2:27777753..27782339
Genome browser
AA seq
785 aa
AA seq
DB search
MSSPYPKLDNRTIDQWKVTELKEELKRRKLTTKGLKDDLIKRLDEAIRIERENAERLERE
NAERLERENAERLERENAERLERENAERLARENAERLEREIAEKIVRENAEKNIEGNAEK
VDNGFNADPEQHAVDAKTTTGFIDGREKAENVVIGGSAAALNQGNIEEDYVLVDKHDTAT
VGEELIVQSATVETTVTVTENVVEYLDLGGQGSQNTEAKKTNENSKPQLENEDPEPQLEN
EDPEPMRESLVSKPQLENEDPKPQLENEDPKPQLENEDPEPTRESLDSKPQLENVDPKPQ
LESESLDATPKDAVLDSSAPNYQVSEVSTVLGSEVNYDYISTDTVSINEKIELKDNIIAD
HVKLELDVKPEMVDPSSSAVVPVNGDSHPMDAEEPPESKASVREKDDNYDTNADISKKND
SVDVGYSEKLNLERSSGDDSMEEDVLDSKQIDSKYSSDYVGDRVEKTEEPIALEDSHVDV
VGDDNSSDKMDTSVDNKNHPALPAEKRKLNDKAAVVTNEPAVKRRRWNSENLKVPEPQNS
IQTPTTTPKDTSQTPILKRNFSRSNSTIGEDIPKERVVPPSQKPPTNSLKIDHFLRPFTL
KAVQELLGKTGKVTDFWMDHIKTHCFVTYSSVEEAVETRNAVYNLQWPTNGGRLLVADFV
DPQEVQTRVQNPQTPATPVSAPVAPAFSATSQHQPSPRLSKQQLQQQLPPPPSXPPPPHL
STLPPARERLPLPPPPPLSEKLDPPIVTLDDLFRKTKATPRIYYLPLSQEQVEAKLAAQG
RNPKQ
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaccatatcccaaacttgacaatcgaacaattgatcagtggaaggttactgag
ttgaaagaagagcttaagaggcggaaattgacaaccaagggtttgaaggacgatttgatc
aaacgtttggatgaggcaattcgaattgaaagggaaaatgccgagaggcttgaaagggaa
aatgccgagcggcttgaaagagagaatgccgagaggcttgaaagggagaatgccgagagg
ctggaaagggaaaatgctgagaggctagcaagggaaaatgctgagaggctggaaagggaa
attgccgagaagattgtgagggaaaatgccgagaagaatatagagggtaatgctgagaag
gtggataatggttttaatgctgatccggagcaacatgcagtggatgctaaaacaactaca
ggcttcattgatgggcgggaaaaggctgaaaacgttgtcattggtggtagtgcagcagca
ttgaatcaaggcaatatcgaagaggattatgttcttgtggataaacatgatactgctact
gttggagaggagctgattgttcaatcagctactgttgaaaccactgttactgtcactgag
aatgtggtagaatatttagatttaggtgggcaaggttcacagaacactgaagcaaagaag
acgaatgagaattcaaaaccacagctagagaatgaggatccagagccccagctggagaat
gaggatccagagcccatgcgggagagtctggtttcaaagccccagttggagaatgaggat
ccaaagccccagctggagaatgaggatccaaagccccagctggagaatgaggatccagag
cccacgcgggagagtctggattcaaagccccagttggagaatgttgatccaaagccccag
ctggagagtgagagtttagatgctacacccaaggatgccgtgctcgactcttctgcccca
aactaccaggtatctgaggtcagcactgttttagggtctgaagtaaactatgattatatt
tctactgatactgtgtcaattaatgaaaagattgaactaaaggataatataattgctgat
catgtcaaattagaattagatgttaagccggagatggtggacccatcatccagtgctgtt
gtcccagtcaatggtgattcacatccaatggatgctgaagagccacctgagagcaaggca
tctgttagagagaaagatgacaactatgatactaatgcagacattagcaagaaaaatgat
agtgtggatgtggggtactcagaaaaattaaatttggagagaagttctggagatgattct
atggaagaggatgtgctggacagtaaacaaattgattcaaagtatagttctgattatgtg
ggagatagggttgagaaaactgaagaacctattgcattggaggatagtcatgttgatgtt
gtgggagatgataattcctctgataaaatggatacaagtgttgataacaagaatcatcca
gctcttcctgctgagaaaagaaagcttaatgataaagcagcagttgtgaccaatgagcct
gctgtaaagaggcgcaggtggaactctgaaaacttgaaagttccagagccacaaaactct
attcaaacacctaccaccacacccaaagatacttctcagacccccattctgaagcgtaac
ttttcaagatcaaactctacaattggtgaggatattcccaaggaacgtgttgttcctcca
tcgcagaagccaccaactaattccttaaagattgatcattttttgcggcctttcaccctg
aaagctgtgcaagaacttcttgggaaaactgggaaggttactgatttctggatggaccac
attaagacccattgctttgttacctattcatctgtggaagaagccgtggagacacggaat
gctgtgtataacttacagtggccaaccaatggaggccgcctcttagtggcggactttgtt
gatcctcaggaagtacaaacccgggtgcagaatcctcagactcctgctacacctgtgagt
gctcctgttgctcctgctttctcagccacttcgcagcatcagccttcacctcgtctatct
aagcagcaactacagcagcagcttccaccacccccttccnctccccctccgccacacctg
tctacccttcccccagcaagagagcggcttcctctgcctcccccacctcctctttcagag
aaacttgatcctccgattgtcactttggatgatctatttcgaaaaactaaagcaacccct
cggatctattacctacctttatcccaagaacaagtagaggcaaaacttgcagcacagggc
agaaaccctaagcagtag
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