Rosa chinensis (China rose): 112186453
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Entry
112186453 CDS
T06020
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A isoform X1
KO
K12856
pre-mRNA-processing factor 8
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112186453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112186453
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112186453
Complex C
U5 SnRNP specific factors
112186453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
RRM_4
PROCT
JAB
STIV_turret_3rd
GIIM
Motif
Other DBs
NCBI-GeneID:
112186453
NCBI-ProteinID:
XP_024180653
LinkDB
All DBs
Position
2:76471055..76478982
Genome browser
AA seq
2336 aa
AA seq
DB search
MWYNAEISPPGTGNTSIPSAVAQPCLPSPADLEEKGRRWQQLSSGKWSNPHGERRAVGSQ
KQDMPPEHVRKIVKEHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRNVK
VLYHITGAVTFVNETPWVVEPIYMAQWATMWIMMRREKRDRRHFKRMRFPPFDDEEPVLD
YADNLLDVEPLEPIQLELDAEEDSAVYDWFYDHKPLVKTKLINGPTYRKWQLSLPIMEAL
YRLSGQVISDLTDRNYFYLFDKESFLTAKALNMCIPGGPKFEPLFRDMVQGEEDWNEFND
INKLIIRSPLRSEYKIAFPNLYNNRPRKVKLSVYHTPLVMHIKTEDPDLPAFYYDPLLNP
IPGTNRSSYDNSGEDGDFVLPEGVEPLLSHTQLYTDTTAAGISLYFAPRPFNLRSGRTRR
AEDIPLVSEWFKEHCPRSYPVKVRVSYQKLLKSFVLNELHRRPPKAQKKKSLFRSLQATK
FFQTTELDWVEAGLQLCRQGHNMLNLLIHRKGLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNPFHLLREILRLTKLVVDAQVQFRLGNIDAFQLADGLQYTFSHVGQLTGMYRYKYRLMR
QIRMSKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRMWLSFLRGMVPLLEQWLGNLLARQF
EGRHSVAKTVTKQRVESNFDLEFRADVLKDILDAMPVGMKQNKAKTIMQHLSEAWRCWKA
NIPWKVPGMPAPVENIILRYVKSKADWWTHGAHYNRERIRRGATVDKTVCRKNLGRLTRL
WLKGEQERQHNYLKDGPYISPEEAVAIYSTTVHWLESRNFQHIPFPPLLYKHDTKLLILA
LERLKESYTAAVKLNQHQREELGLIEQAYDNPHEALIRIKRHLISQRAFKDVSIEFMDLY
SHHIPVFEIDPLEKITDAYLDQYLWYEADKRQLFPNWIKPADSEPPPLLVYKWCQGINNL
ESIWDTSEGECVVMLQTKLERLSEKIDLTLLNRLLRLVLDHNIADYITAKNNVVLSYKDM
SHTNSYGLIRGLQPASFVVQYYGLVLDLMLLGLTRANEIAGPQQKPNEFMTYGATKVETC
HPIRLYARYIDRVHILFRFTQEEARDLIQRYLTEHPDPNNENMVGYNNKKCWARDARMRL
LKHDINLGRSVFWNVKNRLPRSITTLEWEDSFVSVYSKDNPNLLFSMCGFEVRILPKIRM
STKEHQRDGVWNLQNEQTKERTAVAFLRVEDEYMKAFENRVRQILMSSGSTTFTKVINKW
NTALIGLMTYFREAVVHTAELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIG
GLGMLSMGHILIPQSDLRYSRQTEIGVTHFRSGMSHEEEQMIPNLYRYIQPWESEFIDSQ
RVWAEYALKRQEAMEQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFK
QYQILKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVDGILEHTLFKGTYFPTWEGLFW
EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
GKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKLN
SSCADILLFSAHKWQMSKPSLVAEPKDEYDKKTNNKYWIDVQLRWGDYDSHDIERYTRAK
FMDYTTDNMSIYPSPMGVMIGIDLAYNVHSAFGNWFPGSKPLIQQAMNKIMKSNPALYVL
RERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIKWFVDDTNVYRVTMHKTFDGNLVTKPI
NGAIFMFNPGTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIV
TRKGMLDPLEVHLLDFPNIVIKGSELQLPFQVCLKIEKLNDLVLKATEPQMVLFNVYDDW
LKSVSSYTAFSRLILILRALHVNRDKASMLLKPDRTVISEPHHIWPSLSDEQWMKVERAL
TDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQEIADIEKQAKGVSQLTAVT
MRTTNVHGDELISTTTSQYEQAAFRSKTDWRVRAISATNLHLRVNHIYVSSEDTKETGYT
YIMPMNILKKFICVADLRTQVAGYLYGISPPDNPQIKEIRCIVMPPQRGTHQQVHLPSAL
PEHDFLNYLEPLGWMHTQPNELPQLSPQDLTTHANMLENGKQWDREKCIIMTCAFTPGSC
SLTAYKLTPSGYEWGCCSNKNSGRNNNPLDGYLPTHYEKVQMLLSDRFLGVYMVPDNCPW
NFNFMGVRHACDMKYGIKLGPPKEYYHEEHRPTHFMEFSELDKDDPMELDRDYAYA
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atgtggtacaacgccgaaatttcaccgccggggacgggaaatacctcgattccatcggcg
gtggctcaaccctgtcttccgtcaccggccgatcttgaagagaaaggccgcagatggcag
cagctttcctccggcaagtggtccaatccccacggcgaacggcgcgccgtcggttcgcaa
aaacaggacatgcctccggagcatgtgaggaagatcgtgaaagagcacggcgacatgtcg
tcgaagaagtaccggcacgacaagcgggtctacctgggagctctgaagttcgttcctcac
gccgtgtacaagcttctcgagaatatgccgatgccgtgggagcaggtccgtaatgtgaag
gtgttgtaccatattaccggcgcagttaccttcgtcaacgagaccccctgggttgtggag
ccgatctacatggctcaatgggccacaatgtggatcatgatgaggagggagaagagggat
cgccggcatttcaagaggatgaggtttccgccgttcgatgatgaggagcctgtgttggat
tatgctgataacttgttggatgttgagcctcttgagccgattcagctcgagcttgatgcc
gaagaggattcggctgtgtatgactggttttatgaccataaacctcttgtgaagacaaag
ctgatcaacggccccacctaccggaagtggcagctctccctgccgattatggaagccctt
taccggctttcaggacaggtaatttccgatttgactgatcggaactatttctatttgttt
gataaggagtcgtttctgacagccaaggcattgaatatgtgtataccaggtgggccgaag
tttgagccattgtttagggatatggtgcaaggggaggaggattggaatgagtttaatgac
ataaacaagctcattattcggtctccgctgagatcagagtacaaaattgcattccctaat
ctttacaacaacaggccaaggaaggtaaagctctctgtttatcacacaccactggttatg
catattaaaactgaggatcctgacctgcctgcattttattatgatccattgctaaaccca
ataccgggcaccaacaggagtagttatgataatagtggggaagatggtgattttgttttg
cctgaaggggtggagcctcttttgagtcatactcagctttatactgacactactgctgct
gggatttccctgtattttgccccacgcccttttaacttgaggtctggtcggactcgtcgt
gcagaggatatacctcttgtgtcagagtggtttaaggagcattgtcctcggtcatatcct
gttaaggttcgagtcagctatcagaagttgttgaaatcgtttgtgttgaatgagctgcat
cgtaggcctcccaaggcacaaaagaagaagagcttgtttcggtctcttcaggctaccaag
tttttccaaactactgagcttgattgggttgaagcgggtcttcaactctgtaggcagggt
cataacatgctaaatctgctgatacataggaaaggtctgaactatcttcaccttgattat
aattttaatctcaagcctgtgaaaaccctgacaacaaaagagcgtaagaaatctcggttt
ggtaatccttttcatctgttgcgtgaaatcttgcggttaacaaagcttgtagttgatgcc
caggtccagttccgtttgggtaatattgatgcctttcaattggctgatggtctgcagtac
acattttctcatgttggtcagttaactggaatgtaccgttacaagtataggttgatgcgg
cagattagaatgagcaaagatttgaagcacttgatttactaccgtttcaatactgggccg
gtcgggaaagggccgggatgtggattctgggcaccaatgtggaggatgtggttgtccttc
cttcgtggcatggtccctcttctggaacagtggttgggaaatttacttgctagacaattt
gaaggacgccattctgtggcaaagacagtaactaagcagcgtgttgaaagcaatttcgac
ttggagtttcgagcagatgtcttgaaagatattctggatgccatgccagtgggcatgaag
caaaataaggcgaaaacaattatgcagcatctcagtgaggcatggcgttgttggaaagca
aatattccttggaaggttcctggtatgcctgctccggttgagaatataattcttcgttat
gtcaagtcaaaggcagattggtggacacatggtgctcattataaccgtgaacgaattaga
aggggtgctacagtggataagacagtttgtcgaaagaatcttggaagattaactcgcctt
tggctaaagggagagcaggagcgacagcacaattatctcaaagatggtccatatatttca
ccagaagaagcagtagcaatttactcaacaacagtgcattggttggagtcaagaaatttc
caacatattccatttcccccgttgttgtataagcatgataccaagctacttatccttgct
ctggagaggttgaaggaatcttatactgcggcggtaaaattgaaccagcatcaaagagag
gagttgggtctcattgaacaagcctatgataacccccatgaggcattgatacggataaaa
cgtcacttgatctcacagcgtgccttcaaagacgtgagcatagagttcatggatctgtac
agccatcatattccagtttttgagattgaccctcttgagaagattacagatgcatatctt
gatcaatatctatggtatgaggctgacaaacgtcagctcttcccgaactggatcaagcct
gcagactcagagccacctccacttttggtctataaatggtgtcaggggataaacaattta
gagagtatatgggacacaagtgagggggagtgtgttgtgatgcttcagacaaaacttgag
aggttatctgagaagattgacttgacattgctaaataggcttctacgtcttgttcttgac
cataacattgctgattatatcactgcaaaaaacaatgtggtattgtcatacaaagatatg
agtcatacaaattcatatggtcttatacggggtctccagcctgcatcatttgttgtacag
tattatgggcttgttttggatctaatgcttcttggattgactcgggccaatgaaattgca
ggtccacagcagaagccaaatgagttcatgacttatggggccacaaaggttgagacttgc
catcctatcaggctgtacgctcgatacatagacagggtgcatatcttgttccgcttcact
caggaggaggctcgggacctcatacagcgatatcttaccgagcatccagatcccaataat
gaaaatatggttggatataataataagaagtgctgggcaagagatgcaaggatgaggctc
ctgaaacatgatatcaatcttggaaggagtgtcttttggaatgtcaagaaccgtctccct
cgaagcatcacaactttggaatgggaggacagttttgtttctgtttacagcaaggataat
ccaaatttgcttttcagcatgtgtggatttgaagtaagaatacttcccaagataagaatg
agtacgaaggaacaccaaagagatggagtttggaacttgcaaaatgaacagacaaaggaa
aggactgctgttgcttttttacgtgttgaggatgaatacatgaaggcgtttgagaatcgt
gtaaggcagatccttatgtcctcagggtctacaacattcacaaaagttatcaacaaatgg
aatactgcccttattggtcttatgacttacttccgtgaagcagttgtacatacagcggag
ctgttagatttactggtcaaatgtgaaaataaaattcagacccgcattaagattggattg
aattcaaagatgccaagcaggttcccacctgtcattttttacacgccaaaagaaattgga
ggacttggcatgttatctatgggtcacatattgattccacagagtgacctcagatactct
cggcagacagaaattggtgtgacacactttaggagtggaatgagtcatgaagaagagcag
atgattccaaatctttaccgttacatacaaccatgggagagtgagtttatagattcacag
cgtgtttgggcagaatatgcactaaaaagacaggaagctatggaacagaatcggcgtctt
acccttgaagatttggaagattcatgggataggggaataccacgcataaatacattgttc
cagaaggatcgacacactttagcatatgacaaagggtggagagttcgcacagattttaag
cagtaccagatcttgaagcaaaatcctttctggtggacacaccaaaggcatgatggaaaa
ttgtggaatttgaataattatagaactgatgtgatccaagctcttggaggagttgatgga
atacttgagcacaccttattcaaaggaacatacttccctacttgggagggtctcttttgg
gagaaggcatctggatttgaggaatcgatgaagtataaaaagttgactaatgcccaaaga
tctggcctcaaccaaatccccaatcgtaggtttacactttggtggtcgcctaccataaat
cgagccaatgtatatgtcggttttcaagtacagctggatctgacaggaatctttatgcat
gggaagatcccaaccttgaagatatcgttgattcagatattccgtgcacacttgtggcag
aagattcatgaaagtgttgtgatggacctttgtcaggttttggatcaggagttggatgct
ttggaaattgagactgtgcagaaggaaaccatacatcccaggaagagttacaaactgaac
agctcttgtgcagacattctcctcttttctgctcataaatggcaaatgtcgaaacctagt
cttgtggctgagccgaaggatgagtatgataaaaaaacaaacaacaagtactggatagac
gtgcagctccgttggggggattatgattctcatgatattgaacgttacacccgggcaaag
tttatggactatacaactgataacatgtctatctatccttctccgatgggagtgatgatt
ggtattgatttagcctataatgtgcattctgcatttggtaactggtttcccggatcaaaa
ccactgattcaacaggcaatgaacaagatcatgaagtcaaatccggctttatatgtgttg
agggagcgcataaggaaaggattgcagttgtattcctcggagcctacagagccatatttg
tcttcccaaaactatggggagctcttcagcaatcaaattaaatggtttgttgacgataca
aatgtgtatcgtgttacaatgcacaagacttttgacggaaatcttgttacaaaacccatc
aatggtgctatcttcatgttcaatccagggactgggcagctgttcttgaaggttatccac
acaagtgtgtgggcaggacagaagcgacttgggcagttggctaaatggaaaactgcggaa
gaagttgctgctcttgtgcgttctctacctgttgaagaacagccaaagcaaattattgtg
actcgtaagggaatgctcgacccattggaggttcatttactggattttcccaacatagtc
ataaaaggaagtgagctacagcttccttttcaggtttgcttgaaaattgagaagttgaat
gatctggtactaaaggctactgagccacagatggttctttttaatgtttacgatgattgg
ttgaagagtgtttcatcatacactgcattctctcggctcattctgattcttcgggcactg
catgtgaacagagacaaggcaagtatgttgttgaagcctgaccgaacagtcattagtgag
ccacaccacatttggccttctctttctgatgagcaatggatgaaggttgagcgtgctcta
acagatctcattctgtcagactatgcgaaaaagaataatgtgaatacttcagccctcaca
cagtctgaaattcgtgatataatacttggagcagagattactccaccttctcaacagagg
caagagatagcagacattgagaaacaggctaaaggagttagtcagctgacagcagtcacc
atgaggaccacaaacgtgcatggagatgagcttatttccaccactacgagtcaatatgag
caagctgcattcaggtccaaaactgattggcgtgtgagagcaatatcagctacaaatcta
catcttcgtgtcaaccatatttatgtgagttcagaagatacaaaggaaacaggctacact
tacatcatgccaatgaacattttgaaaaaatttatctgtgttgctgatctgaggacacaa
gttgctggttacttgtatggtataagcccacctgacaaccctcagatcaaggaaattcgc
tgcattgtgatgccaccacagcggggcacccaccagcaagttcatcttccatcagctctt
cctgagcatgatttcctcaattatttggaacctctgggatggatgcacacccagccaaat
gagctacctcagctttctcctcaggatctcaccactcatgctaacatgttggagaatggc
aagcaatgggatagggagaaatgcattattatgacctgcgcttttactccaggttcctgc
tcgttaactgcatataaacttactccttctggttatgagtggggatgttgttctaacaag
aacagcggaagaaacaataatccactagatggataccttccaactcattatgagaaggtc
cagatgcttctcagtgatcgcttccttggtgtctacatggttcctgataattgtccatgg
aacttcaatttcatgggagtgaggcatgcatgtgacatgaagtatggcatcaagcttgga
ccacccaaggagtactatcacgaggaacaccgaccaacccatttcatggagttcagcgaa
ctagataaggatgacccgatggagttagatcgagattatgcctacgcatag
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integrated database retrieval system
