Rosa chinensis (China rose): 112186571
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Entry
112186571 CDS
T06020
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112186571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112186571
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112186571
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112186571
Complex C
U4/U6.U5 tri-SnRNP related factors
112186571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
AAA_22
nSTAND3
AAA_19
AAA_16
ABC_tran
TsaE
AAA_7
AAA_30
Sigma54_activ_2
AAA_29
AAA_23
Motif
Other DBs
NCBI-GeneID:
112186571
NCBI-ProteinID:
XP_040370176
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All DBs
Position
2:5992121..5995268
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AA seq
494 aa
AA seq
DB search
MGCESNLKTWVSDKLIALLGYSNPVVVQYVIGLTKKANSQAGLVDKLVEFGFASSTETGA
FAADIFARVCGETSGLKQCGKQERGGAMPVRMMQRTYVLLDSDDDGDAERCSVEVVSHSV
SVTVDFNKKRFRKRPLGQRDGDDDEVIAERVKRRNLPDKDDHEDGSESEEERLRDQRERE
KLEQSIRKRDAAATRKLTKKNLRRKGEEEAVRKTNGDVEGLRRASRQEYLKERERKKMDQ
MRDDVEDECYLFEGVKLTEAENRELSYKKQILELMRKPLGLDEAENVTEYRMPDAYDDEE
RGVTQQKRFSVALQRYKDDSSGDKMNLFGQQKSWEDQQLGKATLEFGSKNKKRVSDEYDF
VYEDQIEFVRGLVIEDDKYDKFEDDKQLQSTKLLESREKTLKMFQGERKTLPIFSFHDEL
LQAVKDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGKIGCTQPRRVAAMSVAARVSQEM
GVKLGHEIWQAIVC
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggggtgtgagagcaacctgaagacatgggtgtctgataagttaatagcattgctcgga
tactctaatccggtagttgttcagtatgttattggattaactaaaaaagcaaactcccag
gctggtttggtggacaagcttgtcgaatttggatttgcgtcatcgactgaaacaggggca
tttgctgcagatatctttgcaagagtgtgtggtgaaacatctggtttgaagcaatgtggg
aaacaagagaggggaggtgcaatgccggtgaggatgatgcagcggacctatgttctgttg
gattcagatgatgatggtgatgcagagagatgttctgttgaggttgtttctcattctgtg
tctgtaacagtggatttcaataagaaaagattcaggaagaggccattgggtcagagagat
ggagatgatgatgaggttattgcagaacgtgttaaaaggcggaacttgccagataaagat
gatcatgaggatggttcagagtcagaagaagagagattgcgtgatcaaagagaaagggag
aaattggagcaaagtataaggaagagggacgcagcagccacacgaaaactgacaaagaaa
aacttaagacgaaaaggggaagaggaggctgttcgaaaaaccaatggtgatgttgaaggt
ttaagaagagcttcaagacaagaatatctaaaggaaagagagagaaagaaaatggatcaa
atgagggatgatgtagaagatgaatgttacttatttgaaggtgtgaagctcactgaagca
gaaaaccgggaattaagttacaagaagcaaatattggagcttatgagaaaaccattaggt
ctagatgaggctgaaaatgtcactgagtacaggatgccagatgcctatgatgacgaggag
cgtggtgttactcaacagaagagattttctgtggctttgcagcgctacaaggacgacagt
tctggggataaaatgaacttgtttggacaacagaaatcttgggaagatcagcaacttgga
aaagcaacattggaatttggttcaaaaaacaaaaaaagggtatctgatgagtatgatttt
gtatatgaagaccagatagagttcgtcagggggttggtgatcgaggatgataaatatgac
aagtttgaggatgataagcaactgcagtccacaaaattacttgagtcaagggaaaaaacc
ttgaagatgttccagggggagaggaaaactttacccatcttctcctttcatgatgagttg
ctccaagctgttaaagatcatcaggttcttgttattgttggcgaaactggatctggcaaa
actacacagattccccagtatttacatgaggcaggatatacaaagcatggaaagattggg
tgtacacagccacggcgagttgctgctatgagtgttgctgccagggtttctcaagaaatg
ggtgtcaagcttggacatgagatttggcaagctatagtgtgctga
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