Rosa chinensis (China rose): 112186708
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Entry
112186708 CDS
T06020
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112186708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112186708
03009 Ribosome biogenesis [BR:
rcn03009
]
112186708
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112186708
Spliceosome [BR:
rcn03041
]
Complex A
U1 snRNP components
U1 related factors
112186708
Complex B
112186708
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
Helicases
112186708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
112186708
NCBI-ProteinID:
XP_024180975
LinkDB
All DBs
Position
2:85800849..85807271
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AA seq
682 aa
AA seq
DB search
MAATATASAGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYDRPTGTAPPSKAS
SAQYISSSVQVQQSSQGQRRDEGDDRYGRGSNGGSKFEAGPRNVQSARSAPVSSNNGPSG
SVSAHGGSVIRGNGPSDSGSGLSAEAYCRRHEITVIGDNVPPPFTSFEATGFPSEILREV
QNAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFMHLKRARNNSQMGPTV
LVLSPTRELATQIQDEAMKFGKSSRIAVVCLYGGAPKGPQLRDIDRGADVVVATPGRLND
ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEIPARRQTLMYTATWPKEVRKIA
SDLLVNSVQVNIGNVDELVANKSITQHVEVLASMEKHRRLEQILRSQEPGSKIIIFCSTK
KMCDQLSRNLTRQFGAAAIHGDKSQTERDHVLSQFRTGRTPVLVATDVAARGLDVKDIRV
VINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYAAELIKVLEGANQRVPPEIR
ELASRGGGMNRFRRWGSGSGGRDGGRSDSSYGGRDGGRGGGFGSSFSTGRYDRGPNNSYD
DKGSAWSNKGFTRERSRSPERFNKAPPTAVGSGGWSFHKAMMEQRGRSSPPPNRVEKGGV
DGFRPSFYGLEEAEEGMIPQED
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcaactgcctctgctggtcctcgatatgctccagaagacccaactctc
ccaaaaccatggaaaggattggttgatggtaaaactgggtatctttacttttggaacccc
gagaccaatgtgactcaatatgataggcctacaggcacagctcctccatcaaaggcttct
tctgcacagtatataagttcttcagttcaagttcaacaatcttcacaaggacaacgtcgt
gatgagggagatgataggtatggcaggggcagcaatggtggatcaaaatttgaggcagga
ccgaggaatgtacagagtgcaagaagtgcaccagtttcttctaacaatgggccaagtggg
tcagttagtgcacatggaggatctgttattagaggaaatggaccatcagactctggaagt
ggtttgtctgctgaggcttattgtcgccggcatgaaataactgttattggtgataatgtg
cccccaccgtttacttccttcgaagctacgggcttcccatctgagattcttagagaggta
caaaatgctggtttttctgccccgactccaattcaagctcaatcatggccggttgctctt
caaagtagagacattgtggccattgctaaaacggggtcagggaagaccttggggtacttg
cttcctggatttatgcatcttaagcgcgcccgtaataactctcagatgggtccaactgtg
ttggtgttatcaccaacaagggagctggccacacagattcaagatgaagcaatgaagttt
ggaaagtcttcaagaatagctgttgtgtgtttgtatggaggagcgccaaagggtccacaa
ttgagagatattgacagaggagcagatgttgtggttgccactcctggccgcctgaatgac
attctagaaatgaagagaatcagtctccatcaagtttcttacctagtgttggatgaggct
gatcgtatgctggacatgggttttgaacctcaaataaggaagattgtgaaggagatacct
gctcgccgccagaccttaatgtatacagcaacatggcccaaggaggttaggaagattgca
tcagatctactggtcaactctgttcaggtgaacattggcaatgttgatgaacttgtcgcg
aataagtcgatcacacagcatgttgaagtactggcgtccatggagaaacacagacgattg
gaacagatattgcgatcgcaagagccaggatccaagataattatattttgctcaaccaaa
aagatgtgtgatcaactttctcgcaacttaacccgccagtttggagcagctgcaattcat
ggtgacaaatctcagactgagagggatcatgtcctgagtcaatttcgcacagggaggact
ccagttcttgtagcgactgatgttgcagctcgaggattggatgttaaggacataagggtg
gttatcaattacgacttccctactggagtagaggattatgttcacaggattgggagaact
ggaagggcaggtgccactgggttggcttacacattctttggtgatcaggatgcaaaatat
gctgcagaactcattaaagttttggaaggagcaaaccagcgtgtacccccagaaattcgt
gagttggcttcacgtggtggtgggatgaacagattcagacgttggggctccgggtctgga
ggtcgtgatggtggccgaagtgattcaagctacggtggaagagatggtggaaggggcggt
gggtttggatcttctttctctactggcagatatgaccgtggtccaaataatagttatgat
gacaaggggtctgcttggagcaacaaaggttttactcgggagcgcagtcgtagtcctgaa
aggtttaacaaagctccgccaacagctgttggctccggaggttggagttttcacaaagca
atgatggaacaacggggacggtcatcaccgcctccaaatcgtgttgagaagggaggagta
gatggtttccgtccttctttctatggactggaagaagctgaggaaggcatgataccacaa
gaagactga
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