Rosa chinensis (China rose): 112187063
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Entry
112187063 CDS
T06020
Name
(RefSeq) periodic tryptophan protein 1 homolog
KO
K14791
periodic tryptophan protein 1
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcn03009
]
112187063
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
90S particles
Other 90S particles
112187063
Pre-60S particles
Other pre-60S particles
112187063
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_CDC20-Fz
WD40
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
WD40_Gbeta
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_C
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_DCAF12
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_WDR75_2nd
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
112187063
NCBI-ProteinID:
XP_024181464
LinkDB
All DBs
Position
2:12477703..12482123
Genome browser
AA seq
501 aa
AA seq
DB search
MISAVSWVPKGVSKPVPAVAEPPTQEEIDELIKSGILDKSGDGGGNDEDDEGEMEVETTS
EGGEVSQALEVAKALGRASKVTKSGSNYDDITEGLKELDMDNYDEEDNDGIDLFSGGYGD
LYYPSNDMDPYLKKDKDDDEDSEDSEDMTINPNDAVIVCARNEDDISQLEIWLYTETEDG
EPDVYVHHDIIISAFPLCTAWLDCPLKGGDKGNFIAVGLMGEPTIEIWDLDIIDEVQPCV
VLGGIAEKKKKKGKKTSIKYKEDSHTDSVLGLAWNKEYRNILASASADKQVKIWDVATGK
CNITMEHHTDKVQAVAWNHFAPQVLLSGSFDHSIVLKDGRVPTHSGYKWTVTADVESLAW
DPHTEHSFVVSLEDGTVQGFDIRAATSAPTSESKPSFTLHAHDKAVCGISYNPLAPNLLA
TGSTDKMVKLWDLSNNQPSCIASMNPKAGAVFSISFSQDNPFLLAMGGSKGKLEVWDTSY
DAAVAQRFGSYIKKSRPQSGA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgatatcggcagtttcctgggtgcccaaaggagtttcaaagccagtccccgcagtcgct
gagccgcccacccaagaagaaatcgatgagttaataaaatctggtatcttagacaaaagt
ggagatggtggtggaaacgatgaggatgatgagggagaaatggaggttgaaaccaccagt
gagggtggtgaagtctcgcaggcattagaggtagcgaaagcactcggcagagcttccaaa
gtgactaaatcagggagcaattatgatgacattaccgaaggattgaaggaacttgacatg
gataattatgacgaggaggataatgatggcattgatctgtttagtggtgggtatggggac
ctttactacccaagtaatgatatggatccatatctcaagaaggacaaggatgatgacgag
gattctgaagatagtgaggacatgaccatcaacccaaatgatgcagtcatagtttgtgct
cgcaatgaggatgatatcagtcagcttgagatttggctgtatactgaaacagaagatggt
gaaccagatgtttatgttcaccatgacatcatcatttcagcatttcccctttgcacagca
tggcttgattgccctctcaaaggtggagacaaagggaattttatagctgttggtttgatg
ggtgaacctaccattgagatatgggatcttgacattattgatgaagtacaaccatgtgtg
gtcctgggtggtattgctgagaagaagaaaaagaaaggaaaaaagacctcaatcaaatac
aaagaagacagtcacacagattctgttctggggcttgcttggaataaggagtacagaaat
atactggccagtgcaagtgctgacaaacaagttaaaatttgggatgtggctactggaaaa
tgtaacattactatggagcatcatacagacaaggttcaggcggttgcatggaatcatttt
gcccctcaagttcttcttagtggatcttttgatcattcaattgtcttgaaagatggaagg
gtgccaacacattccggttataagtggacagtgacagctgatgtagaaagcttagcatgg
gatccacacactgagcattcatttgtggtgagtcttgaagatggtacagtccaaggtttt
gatattcgggccgccacttctgctcctacttctgaatctaaacccagttttactcttcat
gcacacgacaaagctgtttgtggaatatcctataatcctttggcacctaatcttcttgca
actggatccacagataaaatggtgaagctttgggatttatcaaataatcaaccttcatgc
attgcatccatgaatcctaaagcaggagctgtgttttctatttctttctcacaagataac
ccctttttgctggccatgggaggctcaaaggggaaattggaagtatgggatacatcgtat
gatgctgcagttgcccaaagatttgggagttacatcaagaagagcagaccccagtctggg
gcttga
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