Rosa chinensis (China rose): 112187153
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Entry
112187153 CDS
T06020
Name
(RefSeq) autophagy-related protein 13b isoform X3
KO
K08331
autophagy-related protein 13
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
112187153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcn04131
]
112187153
03029 Mitochondrial biogenesis [BR:
rcn03029
]
112187153
Membrane trafficking [BR:
rcn04131
]
Autophagy
Autophagosome formation proteins
ULK complex
112187153
Atg1 complex
112187153
Mitochondrial biogenesis [BR:
rcn03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112187153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
112187153
NCBI-ProteinID:
XP_024181587
LinkDB
All DBs
Position
2:complement(31005038..31009407)
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AA seq
641 aa
AA seq
DB search
MASSHGNNTHSEAAMKEQIITEFYAKSLHIILESRTPYVSSRNYSGEQALSSPSSSSSSS
SSVRPRDKWFNLALRECPAALENLDLWRQSNFEPMVVDVVLVQRRLVSDLVECSPRTDLA
RNLSLKERYPYCWNYEQEDFWCEAKSEKIIERWVLQYDTRKTRDTKSGSRRSSNNPLQML
YKKSILLLRSLYVTVRLLPAYKIYRDLNSSGQILPFTLAHRVASFAEPFTCREDAEMQRF
EFTPVDTGCGRLCLSVLYCSSLSDVSSEPSTPMSPQVIPDYVGSPLADPLKRFPSLPVTG
SLSRATPVSSSFSRRHSWSYDHGIDSPPSVSFSPSPTRSEPHASISNPRSRHFPPTSLPR
YPPETSLDYKKDVGFYEYCPSPGFSPALSPSASPSLPISIPGNHVSKNLLRSESAPVSAP
VAKRANSPASSQKLNFPPSPPLTSTSSGTFKTDKATVGTSVEKLFSFGKGESRQCSGLKI
SSGGSPQISFSRSSTKSFPDDFDDSEYPCPFDYDDDVTDPGSRPESFDQRHEPGGLFPIK
KSQDAAVGALVRMLKKAPPLRQEVSDSVSLSQGCRPEMWSDGKQEANLSSESQAPVQPAD
SSTVISSGLITSKTTADALEELQSYRDIKNSLLAQSSKSHV
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttctcatggtaataatactcactctgaagcagcaatgaaggaacaaataatc
actgaattctatgctaaaagtcttcacataattcttgagtcgaggaccccatatgtgtcc
tcaagaaattatagtggcgaacaagccttgtcgtcgccatcatcttcctcttcgtcctcc
tcgagtgtgaggccaagggataagtggtttaatttagctctaagagaatgccctgctgcg
ctggagaatcttgatctctggcgccagagcaattttgaacctatggtggttgatgtggtt
ttggtccagagacgacttgttagtgacctggtggaatgttcacctagaacggatcttgct
aggaacttgtcattgaaagagcggtatccatactgttggaattatgagcaggaagatttt
tggtgtgaggcaaagagtgaaaagattatagagagatgggtactgcagtatgatactcgc
aagactagagatacaaaatcagggagtaggaggtcaagcaataatcctttacagatgttg
tataagaaatcaatattactcttgaggtctttgtatgttactgttaggcttttgcctgct
tataaaatttatcgtgacctcaattcgtctggccaaattcttccatttactcttgctcac
cgggtggcctcttttgctgagcccttcacatgtagagaagatgcagaaatgcagcggttt
gagtttacccctgtggatacgggttgtggtaggctttgcctttcagtgttgtattgttca
tcactttcagatgtaagctctgaaccatcgactcctatgtctccacaagttataccagac
tatgttgggagcccattggcagacccgcttaaaaggttcccatcccttcctgtgacagga
tcattatcacgtgccactccagtatcgtcttcattctcgaggcgtcatagttggagttat
gaccatggtatagattcaccaccttcagtttctttctcaccttcgcccacgcgttcagaa
cctcatgcttcaatttctaacccaagatctcgccatttcccacccacaagcttaccacgt
tatccgcctgaaacatctcttgattataagaaggatgtaggtttttatgagtattgtcct
tcacctggcttttctcccgcactgtccccatcagcctctccatcattgccaatctctatt
cctggcaatcatgtttcaaaaaatctgttacgatctgagagtgcaccggtcagtgcccca
gtggccaaacgtgctaattcccctgcatcctcccagaagctaaattttcctccatctccc
ccccttacgagtacaagttctggtacttttaagactgataaagctacagttgggacatca
gttgaaaagttattctcttttgggaaaggggagtctagacaatgttctgggcttaagata
tcatcaggcggctcaccccagatatccttttccagaagctccactaagtcttttcctgat
gattttgatgattcggagtatccttgcccatttgattatgatgatgatgtgacagaccct
ggtagcagacctgaatcctttgaccaaaggcatgagcctggaggattatttccaattaaa
aaatcccaagatgctgctgttggcgcgcttgtaagaatgctaaagaaagccccacctctt
cggcaagaggtctcagattcagtaagtttgtcacaaggctgcaggcctgaaatgtggagt
gatggtaaacaagaggccaatctttcttctgagagtcaggcaccagttcagcctgctgat
tcttcaactgttatatcatcagggctcataacatcaaaaactacagctgatgccttagaa
gagctccaaagttacagggatataaaaaactcgttactggcgcaaagtagtaagtctcac
gtgtag
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