Rosa chinensis (China rose): 112187705
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Entry
112187705 CDS
T06020
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112187705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112187705
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112187705
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Step II factors
112187705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
DEAD
OB_NTP_bind
IBR
AAA_22
AAA_19
IBR_1
Helicase_RecD
zf-C3HC4
AAA_30
IBR_2
HA2_N
Herpes_ori_bp
zf-C3HC4_2
ResIII
T2SSE
SLFN-g3_helicase
HTH_45
ABC_tran
AAA_29
RsgA_GTPase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112187705
NCBI-ProteinID:
XP_024182361
LinkDB
All DBs
Position
2:complement(24165080..24171761)
Genome browser
AA seq
1715 aa
AA seq
DB search
MRGSKPAGMSEQRRFYPQPGSHPRAAVPRRPLPRIQRPNFIVYLLSDKRDLRRPDIEAVI
NQCRAKPENFRVSPENNTVASMFYAQWYDALEAMVWLWESRLDRVHNFMPKLDANDSVST
PSDSVELEDRLRALFAGRIKQLIDGDEVKKCEAKRQILAREYDRVRKLAKRPQRNWEDLP
EKEKRCRVELELVESRIREFRSAMNCLLAHVEGKELEEYGEEGLKLFKFGEIRPWSRIQR
LMVRECRRLDEGLPIYAHRQQILEQITNQQVMVLIGETGSGKSTQLVQFLADSGIAADKS
IVCTQPRKIAANSLAKRVKEESSGCFYGESTVTSYQTSSGQQLTSKVTYMTDHCLLQYYM
KDRNMTMISCIIVDEAHERTLSTDLLLALIKDLLGRRHQLRLIIMSATADAEVLSHYFFN
CKIFHVVGRNFPVDVKYAPSFTDGTASNVASYVSDVMRVAREIHKNEKQGTILAFLTSQM
EVEWVCEKFITPGTIALPLHGKLSFEEQSNVFQNHPGKRKIIFATNLAETSLTIPGVKYV
IDSGMVKESKFEPGSGMNVLRVCRISQSSAKQRTGRAGRTEPGICYRLYSEYDFQAMPPC
QEPEIRRVHLGVAVLRILALGVKNLKEFEFIDAPCSEAIDMAMRNLVQLGAVKQNNDVYE
LTQEGRDLVKLGVEPRLGKLILGCYHHNLRKEGLVLAAVMANASSIFCRVGNDEEKLRSD
CFKVQFCHRDGDLFTLLSVYKIWEALPRERRNTWCWENSINAKTMRRCQDTVLELESCLK
HELNRIIPCSWRWNAHVSTDCDIYLKKVILSSLAENVAMFSGYDQVGYEVALTGQHVRLH
PSCSLLVFGQKPSWVVFGELLSSSNQYLACVTTIDFNSLSTLDPPPVFDVSKMEGRKLQL
KVLTGFGSCLLKRFCGKGNSYLLHLVSRVRTICNDELISIKVDYYQNEIMVFATPHNMDR
VINLVSDALECEKRWLRNECLEKCLYHGSGGLPPVALFGAGAEIKHLELHKRCLTVDVFH
SKLDDMDDKEFLTELEESASGSICGHHKFPGTGQENVDKGKGARLTFFTPDAAQKAVELN
DSEFNGSILKVVPSQVGGDHKVYPLLAVRAKILWPRRQSHGFAIVKCDMDDIYPMLADFS
NLVVLGRNIRCQPSKRYMDSVVISGLNRDLSEKEILDVLRTATSRTILDFFLVRGDAVEN
PPCGACEEALLKEISPYMPKRYSHSSCTVQVFQPEPKSHFMRALITFDGRLHLEAAKALE
QLEGKVLPGFLPWQKMECQQLFHSSLSCPGPVYRVIKKQLDPLLESFTHLKGVECNLEEY
PNGSCRVKISANATKTIADLRRRVEELVRGKTIDHPSLTATVLQLLFSRDGTSLMNSLQR
ETGTYIIFDRHKLNVQVFGEAHKVDMVKQKLVESLLNLHESKVLEIRLQGNALPPELMKE
VVRRFGPDLRGLKEKVPGADFTLNVRRQSILIHGSKELKQKVEEIIDETAHMAGSLTKRI
NREADCPICLCDVEDGYRLEDCGHLFCRSCLVEQCESAINNHDSFPLCCTHEGCRSPILI
TDLRSLLSIEKLEDLFRASVGSYVASSCGTYRFCPSPDCASVYQVAAPGTEGEPFVCGAC
YAETCTMCHLEHHPYMSCKQYKNFKEDPDSSLKEWCKGKEHVKSCPVCRYTIEKIDGCNH
IECRCGKHICWVCLAYYGSSDECYGHLRSVHLAII
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgaggggatcaaagccggccggaatgtctgagcagcgacgattttatccgcaaccaggg
tcccacccacgcgccgccgttccgcgacggccgttgcctcgaattcagcggccgaatttc
atcgtttatcttctgtccgacaaacgggacctccggcggccggacatcgaggcggtgatc
aaccagtgcagggcgaagccggagaatttccgggtgagtccggagaacaacacagtcgcg
tcgatgttctacgcgcagtggtacgacgcgctcgaagcgatggtctggctgtgggagtcg
cggctcgaccgggttcacaatttcatgcccaagcttgacgccaacgactccgtctccacg
ccgtccgatagcgtggagctggaggaccgcctgagagccttgttcgccggccgaattaag
cagttaatcgacggcgacgaggtgaagaagtgtgaagcaaagcgccaaattttggccaga
gagtacgaccgagttcgtaagctggccaagaggcctcagaggaattgggaggacttaccg
gagaaggagaagaggtgcagagttgagcttgaattggttgagagtaggatcagagagttc
aggtctgctatgaactgcttgcttgctcatgttgaagggaaagagttggaggagtatggt
gaagaaggcttgaagctgtttaaattcggcgaaattcggccttggagtcgaattcagagg
ttaatggtgagggagtgtcgccgactcgatgagggattgcccatttatgctcataggcag
caaattcttgagcagattactaatcagcaggtcatggtgttgattggagagactggttca
gggaagagtacacaattggttcagtttcttgctgattctggaatcgctgctgataagtcc
attgtatgcactcagcctcgcaagattgctgccaattcattggcaaagagagtcaaagaa
gaaagtagtgggtgtttctatggagaaagcacagttaccagttatcagacatcgtctgga
cagcagttgacttctaaggtaacatatatgacagaccactgtttactgcagtactacatg
aaagatagaaatatgaccatgatttcttgcatcatagttgatgaggctcatgaaaggacc
ttgagtacagatctccttttagcattgatcaaagatttactgggtcgaaggcatcagtta
aggcttataataatgtctgcaacagctgatgcagaagtgctttcacattattttttcaac
tgtaaaatctttcatgtagtggggaggaactttccagttgatgtaaaatatgctccctct
ttcactgacggaactgccagtaatgttgcttcttatgtttctgatgtgatgagggtagca
agagagatccacaagaatgagaaacaagggacaattcttgcatttttgacttctcagatg
gaagtcgaatgggtctgtgagaagtttataacacctggtacaattgcattgccattgcat
gggaaactttcttttgaagaacaatctaatgtttttcaaaatcaccctggaaaaagaaaa
attatattcgccacaaatctggcggagacatccctgacaattcctggggtaaagtatgtg
atcgattctggcatggtcaaagaaagcaaatttgaacctggaagtggtatgaatgttctc
agagtttgcaggatcagccagagttctgctaagcaaagaactgggcgtgctggaagaacg
gaacctggaatatgttatagactctactcagaatatgattttcaggcgatgcctccatgt
caggagcccgagatccgtagagttcatcttggtgtagcagttctgaggattctggctttg
ggtgtcaagaatttaaaagagtttgaattcattgatgcaccttgttctgaagctatagac
atggcaatgaggaatcttgttcagttaggagctgttaagcaaaacaatgatgtctatgaa
ctaactcaagagggtcgcgacttggttaaattgggggttgagcctaggcttggtaaatta
attcttggctgctatcaccataacttgcgtaaggagggccttgttcttgcggctgtaatg
gcaaatgcaagtagcatattttgcagagttggtaatgacgaggagaaacttaggtcagac
tgcttcaaggtgcaattttgccatcgtgatggtgacctctttacccttctatcagtgtac
aagatatgggaagctctgcctcgagagaggagaaacacatggtgttgggaaaacagcatc
aatgccaaaactatgaggagatgccaggacactgtattggaattggagtcttgccttaaa
catgagctcaataggataattccttgtagctggcgttggaatgcgcatgtttcaactgat
tgtgatatatacttgaaaaaggttatactttcttccctggcagaaaatgtagcaatgttc
tcaggatatgatcaagttggttatgaggtggcattaactgggcagcatgttcggctgcac
ccttcttgttcattactggtattcggccagaaacctagttgggttgtttttggtgaactc
ctctcaagttctaatcagtatttggcctgcgtcactaccattgattttaactctttgtct
acccttgatccccctcctgtgtttgatgtgtccaagatggaaggtcgaaagttgcaactg
aaagtgttgactggttttggcagttgtttgcttaaaagattttgtgggaagggcaacagt
tatctgcttcatcttgtatctcgcgtcaggacaatttgcaatgacgaacttatcagcatt
aaagtcgattattatcagaatgagattatggtgtttgctaccccacataacatggatagg
gttataaaccttgtatccgatgcattggagtgtgaaaaaagatggctgcgtaatgaatgc
ttggagaaatgcttgtatcatggttctggtggcttgcctcctgtagcattgtttggggct
ggtgcagagatcaagcatctggagcttcataaaaggtgtttgactgttgatgtatttcat
tcaaaactggatgacatggatgataaggagtttcttactgagcttgaagagtctgcctct
ggtagtatctgtggtcatcataagttccccggcactgggcaggaaaatgttgacaaagga
aagggggccaggttgacattttttactcctgatgctgctcagaaagctgttgaattaaat
gattctgagtttaatggttctatactgaaggttgttccttcacaggttggaggtgatcat
aaggtctatccactccttgctgttagagctaaaattttatggcctcgcaggcaaagccac
gggtttgcaattgttaaatgtgacatggatgatatttaccccatgcttgctgatttttct
aaccttgtagttttaggaagaaatattcgttgtcagcctagcaaaagatacatggactct
gttgtgattagtggactaaacagagatctttctgagaaagaaatccttgatgtgttaagg
actgctactagtaggacaatcctggatttttttctggtgagaggggatgctgtagaaaat
ccgccatgtggtgcatgtgaagaagcactgctaaaggaaatatcaccctatatgcctaaa
cggtactcccatagtagctgcactgttcaggttttccaacctgaaccaaagagtcatttc
atgagagctttgataacatttgacggaagattacacttggaggcagcaaaggctttagaa
caattggaagggaaagtattgcccggcttccttccatggcaaaagatggagtgtcagcag
ttatttcatagctctctgtcctgccctggccctgtttatcgtgtaataaagaagcagcta
gatcctttacttgaaagttttacgcatctaaaaggtgtagaatgtaatctcgaggagtat
cctaatggttcctgcagagttaagatatcagccaatgctacaaaaacgattgctgatctg
aggagacgtgtggaggagcttgtgagggggaagactatagaccacccaagcctcactgca
actgttttgcagcttctgttttccagagatggcaccagtctaatgaactcgttacagcga
gagacaggaacatatatcatttttgacaggcacaaactcaatgtacaggtctttggtgaa
gcacataaagttgacatggtcaagcagaaattggttgaatcccttttaaacctccatgaa
agcaaggtgcttgagatccgccttcaaggtaatgctttacctcctgagttgatgaaagag
gttgttagaaggtttgggccagacctccgagggctcaaagagaaggtaccaggggctgat
tttactctaaatgtacgccgtcaatccattctcatccacggaagcaaggagttgaagcaa
aaagttgaagagattattgatgagactgcacatatggctggtagtttgactaagaggata
aatagggaagctgattgtccaatctgcttgtgtgatgttgaagacggttaccggcttgag
gactgtggtcacttgttttgtcgttcatgtttggtggagcagtgcgagtctgcaatcaat
aatcatgatagctttccattatgctgcactcatgagggttgcaggtctccaattttgatc
acagatctcagatctcttttatcaattgagaagctggaagatctgtttagggcttcggtg
gggtcatatgttgcttcaagttgtggcacctacaggttttgcccatctcccgactgtgct
tcagtctatcaggtagcggctcctggaacagaaggtgaaccatttgtttgtggtgcatgt
tatgcggagacgtgtaccatgtgccatttagaacatcatccttacatgtcatgcaagcag
tacaagaatttcaaggaagatccggattcttcattgaaggagtggtgcaaaggaaaagaa
catgtgaagagctgcccggtttgcagatatacaattgagaagatagatgggtgcaaccat
atagaatgtcggtgcgggaagcatatttgctgggtttgtttggcctattatggaagcagc
gatgaatgttatggccacttgagaagtgttcacctggcaatcatttga
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integrated database retrieval system
