Rosa chinensis (China rose): 112187992
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Entry
112187992 CDS
T06020
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112187992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112187992
03036 Chromosome and associated proteins [BR:
rcn03036
]
112187992
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112187992
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
112187992
COMPASS/SET1 complex (yeast)
112187992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_2nd
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
KNTC1_N
Beta-prop_Nup120_160
Cytochrom_D1
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
112187992
NCBI-ProteinID:
XP_024182748
LinkDB
All DBs
Position
2:11705986..11708592
Genome browser
AA seq
340 aa
AA seq
DB search
MSMSSIPQMAGGPEREDKVSLELTEEILQSMEVGLAFRDYNGRISSLDFHKASSYVVTAS
DDESIRLYDVSTATCLKTINSKKYGVDLVRFTSHPTTVIYSSKNGWDESLRLLSLNDNKY
LRYFKGHHDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQG
LVFTIAFGGYIRMFDARMYEKGPFDIFSVGGDMSDANVVKFSNDGRLMLLTTTDGHIHVL
DSFRGTLLSTYNVKPVSSNATLEASFSPDGMFVMSGSGDGSVYAWSVRSGKEVTSWLSTE
SEPPVIKWAPGSLMFATGSSELSFWIPDLSKLAAYVGGRK
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgtcaagcattccccaaatggcaggtggaccggaaagagaagataaggtctct
ttggagctgacggaggagattctccagagcatggaagttgggctggctttcagagactac
aatggtagaatcagttcgttggattttcacaaggcttcgagttatgtagtgactgctagt
gatgatgagtcgattcgtttgtatgatgtgtccactgcaacgtgcttgaagaccattaac
agcaaaaaatatggggttgatttggtccgctttacttcccatcccaccacggttatatac
tcgtcgaaaaatggctgggatgaatcgctgaggcttctctcattgaatgacaacaagtac
ttgcgctatttcaaaggacatcatgacagggttgtctcacttagcttgtgctcccgcaaa
gagtgcttcatttctggttctcttgatcggacagttctgctttgggatcaacgagccgag
aagtgccagggtcttttacgtgtacaaggaaggcctgccactgcttatgatgaccaaggg
cttgtttttacaattgcctttggtggatacatacgaatgtttgatgcccgcatgtatgaa
aagggtccctttgatatcttttctgttgggggagatatgtctgatgcaaatgttgtaaag
ttcagtaatgatgggagacttatgctgttaacaacgacagatggacatattcatgtactt
gattcattccgtggcacgcttttatccacgtacaatgtaaagcccgtttcaagcaatgct
acattagaggcttcttttagcccagatgggatgtttgttatgtcaggttcaggtgatggt
agtgtctatgcttggagtgttcggagcgggaaagaggtcacaagttggcttagtactgaa
agtgaacctcctgttattaaatgggctcctggaagcctcatgtttgcaactgggtcttct
gaactatcattttggattccggatttgtctaaactggcagcttatgttggtggaaggaag
tag
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integrated database retrieval system
