Rosa chinensis (China rose): 112188373
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Entry
112188373 CDS
T06020
Name
(RefSeq) sm-like protein LSM5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112188373
09123 Folding, sorting and degradation
03018 RNA degradation
112188373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112188373
03041 Spliceosome [BR:
rcn03041
]
112188373
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112188373
mRNA degradation factors
5'-3' decay
Lsm complex
112188373
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112188373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
112188373
NCBI-ProteinID:
XP_024183245
LinkDB
All DBs
Position
2:complement(34145740..34163401)
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AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPESE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaatccgtcgcagctactcccctcagagttgatcgaccggtgcatagggtcg
aagatatgggtgatcatgaagggcgacaaggagctcgtcggaactctcaggggtttcgat
gtctacgtcaacatggttcttgaagacgtcactgaatatgagattactgccgaaggaaga
aggataactaagcttgatcagattttactcaatggaaacaacattgccattctggtccca
ggtggctcccccgaatcagagtaa
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