KEGG   Rosa chinensis (China rose): 112188373
Entry
112188373         CDS       T06020                                 
Name
(RefSeq) sm-like protein LSM5 isoform X1
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03018  RNA degradation
rcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112188373
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112188373
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcn03019]
    112188373
   03041 Spliceosome [BR:rcn03041]
    112188373
Messenger RNA biogenesis [BR:rcn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     112188373
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     112188373
Spliceosome [BR:rcn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    112188373
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 112188373
NCBI-ProteinID: XP_024183245
LinkDB
Position
2:complement(34145740..34163401)
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPESE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggcgaacaatccgtcgcagctactcccctcagagttgatcgaccggtgcatagggtcg
aagatatgggtgatcatgaagggcgacaaggagctcgtcggaactctcaggggtttcgat
gtctacgtcaacatggttcttgaagacgtcactgaatatgagattactgccgaaggaaga
aggataactaagcttgatcagattttactcaatggaaacaacattgccattctggtccca
ggtggctcccccgaatcagagtaa

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