Rosa chinensis (China rose): 112188391
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Entry
112188391 CDS
T06020
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112188391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112188391
03041 Spliceosome [BR:
rcn03041
]
112188391
03036 Chromosome and associated proteins [BR:
rcn03036
]
112188391
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112188391
Spliceosome [BR:
rcn03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112188391
Complex B
112188391
Complex C
U2 SnRNP specific factors
112188391
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112188391
TFTC complex
112188391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
112188391
NCBI-ProteinID:
XP_024183267
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All DBs
Position
1:complement(56278119..56282635)
Genome browser
AA seq
1248 aa
AA seq
DB search
MHLYSLTLQRATGIVCAISGNFSGEKTPEIAVARGKVLDLLRPDAAGKIQTLLSVEIFGA
IRSLAPFRLTGSRKDYIVVGSDSGRIVILEYNKDKNVFNKIHQETFGKSGSRRIVPGQYL
AVDPKGRAVMVGACEKQKLVYILNRDVANRLTISSPLEAHKSHNIVFSICGVDCGFDNPV
FAAIELDYSELDQDSSGEVARKYVTFYELDLGLNHVCRKWSDQVDDGANLLVMVPGGGDG
PSGVLVCAENFVIYKNQGQGDVRAVIPRRADLPAQRGVLIVSAATYKLKSMFFFLLQTEY
GDIFKVTLEHNDDVVSELKIKYFDTIPVTTSMCVLNSQLLFAASEFGNHALYQFQAIGED
PDVESSSALFMETEEDFQPLCFQPRKLKNLVGIDQVESLMPITDMKVSNLFEEETPQIFT
LCGQGPRSSLRILRPGLAISEMAVSELPGIPSAVWTVKKKVTDEFDAYIVVSFANATLVF
SIGERIEEVIDSGFLDTTPSLAVSLIGDDALMQVHPNGIRHIREGGHINEWRTPGKRTII
MVGSNRLQVVIALSGGELIYFDVDMTGQLVEVEKHELSGDVACLDIAPVPEGRQRSRFLA
VGSYDNTICILSLDPDDCMQILSVQSVSSIPESLLFLEAQASVSGEDGADHPANLFLYAG
LRTGILFRTVVDMVTGQLSDSHSRFLGLRAPKLFSINIRGKHAMLCLSCRPWLGYIHQRH
FLLTPLSYETIEYVASFSSDQCAEGVVAVAGSSLRVLTIERLEETFNETVIPLRYTPRKF
LVQVKRKLLVIIESDQGAFTAEERKTAKRKTRKDVDEDFSPPRKRRNTSSNGGADLSPPK
ECFEAAEIGEKRNGNVEQMENDDNEDDPLSDEHYGYPKAESDKWVSCIRVLDPKTATTTC
LLELDNEAAISVCTVNFHDNAGLVGATPPKEYGTLLAVGTTKGLQFWPKKSITGGFIHIY
RFLDDGKSLELLHKTEVDGVPLALCQFQGRLLAGIGSVLRLYDLGRKRLLRKCENKLFPN
NIVSIHTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDRVPRWLTASFHIDFDTMAGAD
KFGNVCFVRLPQDVSDGIEEDPTGGRIKWKQGKLNGAPNKVEEIVQFHVGDVVSYLQKAS
LIPGGGECIIYGTVMGSLGALFAFTSRDDVVFFSHLEMYMRQEHPPLCGRDHMAYRSAYF
PVKDVIDGDLCEQYPTLPMDVQRKIAVELDRTPGEILKKLEEIRNKII
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgcacctctacagtctcactctccagcgcgcgacgggcatagtctgcgccatcagcggc
aacttctccggcgaaaagaccccagaaatcgccgtcgcccgaggcaaagtcctcgacctt
ctccgccccgacgccgccggtaagatccagactctcctctccgttgaaattttcggcgcc
attaggtctttagctccgtttaggcttaccggctcccgaaaagactacattgtcgtcggc
tccgattccggccgaatcgtaatactagaatacaacaaagataagaatgtatttaataaa
attcaccaagagaccttcggaaaatccgggtctcgccggattgttccgggtcagtacttg
gcggttgacccgaaaggcagggctgttatggttggagcctgtgagaagcagaagctagtg
tacattttgaatagggatgtagctaacaggttgactatatcgtcgccgttggaggcacat
aagtctcataatatagtgttttcgatttgtggggttgattgtgggtttgataatcctgta
tttgctgccattgagctggattattccgagttggatcaggattcgagtggggaggtggct
cggaagtatgtgactttctatgagcttgatttggggcttaaccatgtgtgtaggaagtgg
tctgatcaggttgatgatggggcgaatttgctggttatggtgccgggaggtggggatggg
ccgagtggagtgttggtttgtgcagaaaattttgtgatttataagaatcagggacagggg
gatgtgagggctgtgattcctaggcgtgctgatttgcctgcgcagcgtggggttcttata
gtttcggcagctacttataagctgaagtccatgttcttttttcttttgcagactgagtat
ggggatatattcaaggtgactttggagcataatgatgatgttgtctcggaattgaagatc
aagtactttgatacaatcccagtcacaacttcaatgtgtgtgttgaattcgcagcttttg
tttgctgcttcggagtttgggaatcacgctttgtatcagttccaggcaataggcgaagat
cctgatgtggagtcctcctcagctttgttcatggaaactgaagaggatttccagccattg
tgtttccaacctagaaaacttaagaaccttgttgggattgatcaggttgagagcttgatg
ccgataacggacatgaaggtctctaatctgtttgaagaagaaacacctcaaatatttacg
ctttgtggccagggtcctcgttcatctctcaggatactaagacctggtttggctatcagt
gagatggctgtgtcagagcttcctggcataccgagtgctgtctggacagtgaaaaagaag
gtgactgatgagtttgatgcatacattgtggtgtcatttgcaaacgctactcttgtgttt
tcaattggtgagagaatcgaagaagttattgacagtggttttcttgatactaccccttca
cttgccgtgtctttgataggtgatgatgctctcatgcaagttcacccaaatggcattagg
catattagggaaggtggacatatcaatgaatggagaactcctggaaagagaacgattata
atggttggctctaatagacttcaggtggtcattgctttgagtggaggagaacttatatac
tttgatgttgatatgactggtcaactggtggaggttgagaagcatgaattgtctggagat
gtagcttgtctggacattgccccagtacctgaagggagacaaagatctcgtttccttgca
gttggctcatatgacaacacgatttgtattttgtctttggatcctgatgactgtatgcag
attctgagtgttcaaagtgtctcttcaattccagaatctctcctctttcttgaggctcag
gcatcagttagtggtgaggatggtgcggatcatcctgccaaccttttcctttatgccggt
ctacgaactgggattttgttcagaacagtggtggatatggtgacaggtcagctttctgat
tcccattctcgattcttaggactaagagctcctaagctattttctattaatataagaggc
aagcatgccatgctttgtttgtcatgtcggccctggcttggttatattcatcaaagacat
tttctgttaacaccactatcgtatgagactattgaatatgtggcctcattttcatctgat
caatgtgcggaaggtgtagttgctgttgctggcagttctttgagggttttaactattgaa
agattggaagaaacatttaatgaaactgtgattcctctgaggtatacccctagaaagttt
ttggttcaagtgaaacgaaagcttttggtaattattgaaagtgatcaaggagcattcaca
gcagaagagcgtaaaactgcaaaaaggaaaactaggaaggatgttgatgaagatttctct
ccaccaaggaagcgtaggaacactagtagcaatggtggtgcagatctttctccaccaaag
gagtgctttgaggctgcagaaataggtgaaaaaagaaatggtaatgtggagcagatggaa
aatgatgataatgaggatgatcccctctctgatgagcactatggctatcccaaggcagag
tctgacaaatgggtttcttgcattagagttcttgacccaaagacagcaactacaacttgt
ttgctggagctcgataacgaagctgcaatcagtgtatgtacagtgaattttcatgataac
gccggcctggttggggcaactcctccgaaggagtatggtacgcttttggctgttggaacc
acaaagggacttcaattttggcccaagaaaagtataaccggaggatttattcatatatat
cgatttcttgatgatggaaagtcccttgaacttttgcacaagacagaagtggatggtgtt
cctcttgctttatgtcagtttcagggaaggttactagcagggataggatcagtgctcaga
ctatatgatttggggagaaaaagattgcttaggaaatgtgagaataagctgtttcccaac
aatattgtatccattcacacctatcgtgatcgaatatatgtaggtgacattcaggagtca
ttccactactgcaagtataggcgggatgagaatcagctgtatatatttgctgatgatcgt
gttccaagatggctgacagcatcgttccatattgattttgacacgatggcaggtgcggac
aagtttgggaatgtgtgctttgtgcggttaccacaggatgtttcagatgggatagaagaa
gatccaacaggtgggaggataaaatggaagcaggggaagttgaatggtgctccaaacaaa
gtggaggagatcgtgcagtttcatgttggcgatgtagtcagctacttgcagaaggcatct
ctcattccaggtggtggtgagtgcatcatttacgggacagtgatgggtagcttgggtgca
ttgtttgcattcacttcccgtgatgacgttgtcttcttttctcacctggagatgtatatg
aggcaggaacatccacccttgtgtgggagagatcacatggcttatagatcagcttatttc
ccggttaaggatgtgattgatggagatctttgcgagcagtacccaacactgcctatggat
gtacagaggaaaattgcagtcgagttggataggactcctggagagatactaaagaaactc
gaggaaattcgaaataagatcatttaa
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