Rosa chinensis (China rose): 112188696
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Entry
112188696 CDS
T06020
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112188696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112188696
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
112188696
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
112188696
DNA repair and recombination proteins [BR:
rcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
112188696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
NFACT_N
Hamartin
Motif
Other DBs
NCBI-GeneID:
112188696
NCBI-ProteinID:
XP_024183635
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All DBs
Position
2:51968163..51971755
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AA seq
398 aa
AA seq
DB search
MPELPEVEAARRAIEENCVGKKITKAIVADDSKVIDGVSRADFEASLLGKTIVAAHRKGK
NMWLQLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVKDTDEWPSKYSKVFVQLDDGLEF
SFTDKRRFARVRLLEDPTSVPPISELGPDALLEPMTVDELLASLSKKKISIKALLLDQSF
ISGIGNWVADEVLYQARIHPEQSSATLSKECVGALHKSIKEVIEKSVEVGADSDQYPSNW
IFHSREKKPGKVLVDGKKINFITVGGRTSAFVPELQKLTGNQAAKAGSKRTNKSIDDVDE
EASDEEVKGTTKSKKGRKPGGQAKRSAVKRKSKDSDDEDNDNDDSADDVDHEDSDDDADE
DRKNKTRKVTTSKQSKAGTTSKKKVQTSQNSKPKKRAK
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctaccggaggtggaggcggcccggagggccatagaggaaaactgcgtcggg
aagaagatcacgaaagcaatcgtagccgacgactccaaagtcatcgacggagtctcgcgc
gcggacttcgaggcctcgctcttggggaagaccatcgtcgccgcccaccgcaagggcaag
aacatgtggctccaactcgactctcctcctttcccttccttccaattcgggatggcgggt
gctgtgtatattaaaggggttgcggtcaccaagtacaagaggtctgctgtgaaggacact
gatgagtggccttccaaatattccaaggtttttgtccaactggatgatggtctggagttc
tcgttcactgacaagaggcgatttgcaagagtccgcctacttgaagatccaacttctgtg
ccccccatatctgagctcgggcccgatgctctcttggagccaatgacagtagatgaactt
cttgcatcattaagcaagaagaaaatatcaattaaggctctattgcttgatcagagcttt
atatcaggaattggcaattgggttgctgatgaagtactataccaagcaagaattcatccg
gagcaaagttctgccaccctgtccaaagaatgtgttggagccttacacaaaagcatcaaa
gaggtcattgaaaaatcagttgaagttggagcagatagtgatcaatatcctagtaattgg
atttttcattcccgtgaaaagaaaccgggaaaggtgttggttgatgggaagaagattaat
tttatcacggttggtggcaggacttcagcttttgtaccagagcttcagaagttaactgga
aatcaagctgccaaagcaggaagtaaacgaactaataagagtattgatgatgtcgatgaa
gaagcaagtgatgaagaagtcaagggaactaccaaatctaagaaaggtaggaagcctgga
ggtcaggccaagaggtctgctgtgaaaagaaaatctaaagacagtgatgatgaagacaat
gacaatgatgattctgctgatgatgtcgatcatgaagacagtgatgatgatgctgatgaa
gatcgaaagaacaaaacaagaaaggtgacaactagtaagcaatccaaggcagggacgaca
tcaaagaaaaaggtgcagaccagtcaaaatagtaaaccaaagaagagagcgaagtag
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