Rosa chinensis (China rose): 112190468
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Entry
112190468 CDS
T06020
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112190468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112190468
Enzymes [BR:
rcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
112190468
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112190468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
SRPRB
AAA_24
ABC_tran
AAA_29
ATP_bind_1
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
112190468
NCBI-ProteinID:
XP_024185664
LinkDB
All DBs
Position
2:complement(83409276..83412291)
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AA seq
428 aa
AA seq
DB search
MAGGGIRQVKLERECELRIEVGNDAPLKLRLLNGTAEIFGTELPPEIWLTFPPRLKFAVF
TWYGATIEMDGTTETDYTADETPNISYVNVHAVLDARRNRAKTLSSDDPNSPQAQGPRVI
VVGPSDSGKSTLSKMLLSWAAKQGWKPTFVDLDIGQGAITIPGCIAATPIEMPIDPVEGI
PLDMPLVYFYGHTTPMSNVDLYRVLVKELSQMVERQFTGNAESQAAGLVINTMGWIEGAG
YELLLHAIDTFNANVVLVLGQEKLCSMLRDVLKNKPNVDVVKLQKSGGVVSRNVKFRQKS
RSHRIREYFYGLSNDLSPHSNIANFGDLSIFRIGGGPQAPRSALPIGAEPAADPTRVVPV
NINRDLLHMVLAISYAKEPDEIISSNVAGFVFVTDINIERKTITYLAPAAGELPGKFLIV
GSLTWLET
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcggaatcaggcaggtcaaattggagcgggagtgcgaactcagaatcgaa
gttggcaacgacgcgcctctcaagctccgtcttctcaacggtaccgccgagatcttcggc
accgagctcccccctgaaatctggctcaccttccctcccaggctcaaattcgccgtgttc
acttggtacggagccacaatcgagatggacggcaccaccgaaacggattacaccgccgat
gagacgccgaatatcagttatgtaaatgtgcatgctgtgctggatgcccggcgaaaccgt
gctaaaacgctgtcgtctgatgaccctaattctcctcaggctcagggaccgagggtgatt
gtcgtgggaccttcggattctgggaaaagtacattgtcgaaaatgctgcttagttgggca
gctaagcagggatggaaacctacttttgtcgacttggatattggacaaggagctataaca
attccaggatgcattgctgctactcctattgaaatgcctattgatccggtggaagggatt
ccccttgacatgcccctcgtttatttctatgggcacacaactcccatgagcaatgtggat
ttgtacagagtgcttgtgaaggagctttctcaaatggtagagagacaatttactggtaat
gctgaatctcaagctgctggattggtcatcaacaccatgggatggatagaaggtgccggc
tatgagttgcttcttcatgcaattgacacattcaatgctaatgttgtcttggttttgggt
caggaaaagctttgcagcatgctcagagatgtattaaagaacaagcccaacgtggatgtt
gttaaacttcaaaaatcagggggagttgtatccaggaatgtaaaattccgtcaaaaatcc
aggagtcataggataagggaatacttttatggcctctcaaatgatctcagcccacactct
aatatcgcaaatttcggtgatttatccatctttcgaatcggtggtgggccacaggcccct
cgatcagctttgccaattggtgccgagcctgctgctgaccctacaagggtggttcctgta
aatattaaccgtgatttgctccacatggttctcgctatttcatatgctaaggagcccgat
gaaattatctctagtaatgttgctggatttgtctttgtcacagacatcaacattgaaaga
aagacaattacctaccttgcaccagccgctggcgaacttccaggcaaatttttgatagta
ggatccttgacatggcttgaaacatga
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