Rosa chinensis (China rose): 112190487
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Entry
112190487 CDS
T06020
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar sorting protein 39-like
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112190487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcn04131
]
112190487
Membrane trafficking [BR:
rcn04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
112190487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
112190487
NCBI-ProteinID:
XP_024185685
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All DBs
Position
2:12830546..12836780
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AA seq
1051 aa
AA seq
DB search
MLYKYGKLSLVLLIWESYGPKLLLGCSDGSLRIYAPDSSGSRSRSPPSDYHTQSLQKEPY
SLERNIAGFSKKPLLSMEVLESRELLLSLSETISFHGLPNLGTIAVITKAKGANVYSWDD
RRGFLCFARQKKVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICIGIRRDYMILNST
TGALTDVFPSGRLAPPLVVPIPSGELLLGKDNIGVFVDQNGKLAHEGRVCWSEAPTVVVI
QKAYGIALLSRYVEVRSLRAPYPLIQTVVLRNARRLLQSNNAAIVALDYAVYGLFPVPLG
AQIVQLTASGEFEEALSLCKLLPPEEASLRAAKEASIHIRCAHHRFDTGDYEDAMEHFVA
SQVDITYVLSMYPSIVLPKTTMISDPDKLMDIPGDSSYLSRGSSGMSDDTEPSALSHVLE
SQESAALESKKMSHNTLMALIKFLQKKRFSIIEKATAEGTEEVVLDAVGDKFSSHESNRY
KKTNKGRGSIPVTSRAREMAAILDTALLQALLLTGQSSAAVELLKGLNYCDVKICEXILL
KSNHHAALLELYKCNSMHHEALKLLHQLVEESKSNQVPPEVIQKIKPESIVEYLKPLCGT
DPMLVLEYSMLVLESCPTQTIELFLNGNIPADLVNSYLKQHAPNMQARYLELMLAMDENG
ISGNLQNEMVNIYLSEVLDWYADLSAQQKWEEQTYSMTRKKLLSALESISGYSPEALLKR
LPSDALYEERAILLGKMNQHELALSLYVHKLHLPEMTLSYCDRVYDSLAHQPSSRSSGNI
YLTLLQIYLNPKRTTKNFEKRITNLVSPQNIGTPKVGSANTVKSKGGRGAKKIAAIEVAD
DIRVGQSGTDSSRSDGDADADADESGEEGGSAIMLDEFLDLLSRRWDRINGAQALKLLPR
GTKLQNMLPFMGPLLRKSSEAYRNLSVIKSLRQSDNLQVKEELYEKGKGVVKITSDSMCS
LCRKKIGTSVFAVYPNMSTIVHFVCFRDSQSMKAVGRGSPLRKRRRPSIKWCQRSPVRAW
CFRCRKNIGMSGFCCVYQTGRQLCNFVALET
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgctatataaatatgggaaactatcccttgttttgttaatatgggaatcgtacggccct
aagctcctcctcggctgctccgatggatccctcagaatctacgctccagattcctccggc
tcccgctcccgctccccaccctccgactaccacactcaatccctccaaaaggaaccctac
tccctcgagagaaacatcgccgggttctctaagaagccgctgctctctatggaggtcttg
gaatccagagagctccttttgtccctctccgaaacgatatcgtttcacggcctcccgaat
ttgggcaccatcgccgtgatcaccaaggccaagggcgccaatgtgtactcctgggacgac
cgccgcggattcctgtgcttcgccaggcagaagaaagtctgtattttccgacacgacggt
ggaagaggtttcgtggaggtgaaggaattcggagttccggatgtggtgaagtctatgtca
tggtgtggagagaatatatgtatagggattaggagagattatatgatactcaattctaca
actggtgcattgactgatgtgtttccttcggggaggctggctccgccgctggtggttcct
attccttccggggagcttcttctcggcaaggataacattggggttttcgtggaccaaaat
gggaaacttgctcatgaaggcagggtttgttggtctgaggcgcctacggttgttgttatt
cagaaggcctatggaatagctctgttatcgagatatgttgaggttcggtccctacgagcg
ccatatccattgatacaaacggttgttcttcgaaatgctcgtcgtcttctccaaagcaac
aatgctgctattgttgcattagactatgctgtttatggtctcttccctgtccctcttggt
gcccagattgtacaattaacagcatctggcgagtttgaggaagctttgtcattatgtaag
ctgcttccgcctgaagaagcaagccttagagctgcaaaggaggcttcaatccatataaga
tgcgctcaccatcgttttgatactggggactatgaggatgccatggagcatttcgtggca
tctcaagtagatataacctatgtactttctatgtatccttctattgttcttcctaagaca
accatgatatccgatccagacaaactgatggatatacctggggactcatcatatctctca
agaggttcatctggtatgtcagatgatacggaaccctctgcactgtcacatgtgctggaa
tcacaggagagtgcagcacttgagtccaaaaaaatgagccataacactctcatggctctc
attaagttcttgcagaaaaagagattcagcataattgaaaaagctactgctgaggggaca
gaagaggttgttttggatgctgttggagacaaattctcatcccatgagtctaataggtat
aagaagacaaacaaggggcgtggcagcattccagttacctcccgtgctagggagatggca
gctatactggatacagccctacttcaagctctacttcttactggacagtcttcagcggcc
gtggaattactgaaaggtcttaattactgtgatgtaaaaatatgcgagtagattctccta
aaaagcaatcatcatgctgctttgttagaactttacaagtgcaattcaatgcaccatgaa
gctctcaaacttttgcatcagttagtagaagagtcaaaatctaatcaagtgccacctgag
gtgatccaaaagataaagccggagtcaattgttgaatatctcaagcctctttgtggcact
gatcccatgctcgtcttggagtattcaatgcttgtccttgaaagttgcccaacgcagaca
attgagctctttttgaatggaaatattccagctgatttggtaaactcttatttgaagcag
catgctccaaacatgcaggccagatacttggaacttatgcttgctatggatgaaaatggg
atatccgggaatctgcaaaatgaaatggtaaatatctatctatcagaagtccttgactgg
tatgccgatttaagtgctcagcagaaatgggaggagcaaacttactccatgacgagaaag
aaattattgtctgctttagagagtatatcaggttatagtccagaggctttgctgaaacgt
cttccgtctgatgctttatatgaagagcgtgcaattttgctgggcaaaatgaaccaacat
gagcttgccttatccctatatgttcacaagcttcatcttcctgagatgacactgtcctat
tgtgatcgggtgtatgattcgttggcgcatcaaccgtcttcaagatcttctggcaatata
taccttactctattgcaaatttatcttaatccgaagagaacaaccaagaactttgagaag
cggattacgaatttggtatcgccgcagaacataggaacaccaaaggttggttctgcaaat
acagttaaaagtaaaggaggtcgcggagctaagaaaattgctgcaatagaggtggcagat
gacataagagtcggtcaaagtggcactgacagtagcaggagtgatggagatgcagatgca
gatgcagacgagtctggtgaggaaggagggtcagcaatcatgcttgatgagtttcttgat
ttgttgagcagaaggtgggacagaataaatggagctcaagctctcaaacttttgccaagg
gggactaaactacagaacatgcttccgtttatgggacctcttttgagaaaatctagtgaa
gcttacaggaacctttcagtgataaaaagtttaagacaaagcgataacctgcaggttaaa
gaagaactctacgaaaaagggaaaggggtggtaaagatcacgagtgacagcatgtgctcc
ctctgcagaaagaaaatagggacaagtgtttttgctgtgtatccgaatatgagtacaata
gtgcattttgtttgcttcagggactcccaaagtatgaaagcagtgggcagaggatcgccc
ttaaggaagcgacgaagaccaagtattaaatggtgccaaagatcaccagtgagagcatgg
tgcttccgttgcaggaagaatatagggatgagtggtttttgctgtgtataccagacagga
cgacaattgtgcaattttgttgctttagagacttga
DBGET
integrated database retrieval system
