Rosa chinensis (China rose): 112190849
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Entry
112190849 CDS
T06020
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112190849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112190849
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112190849
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
RT_RNaseH_2
Motif
Other DBs
NCBI-GeneID:
112190849
NCBI-ProteinID:
XP_024186117
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Position
2:4492142..4499586
Genome browser
AA seq
1076 aa
AA seq
DB search
MQRQKSILSFFRKPAPDKSTSTAGDDGLGVNQFAAKEQEQEQKPVGSNQPPDLEVRGTDT
PPEKVPRQIQPANSASLKDSSPFSSIMHKFMKVDDTNKASQSHRNEPNGGSSNDCTVSGK
LNDTNSSKKINRGAVMHIESDEDIAGPETPGTQRLVPRMKRIQEEIPKSGDKFGSSLPDS
SKRLKVLGEPTVLDKSHGEASDMASKFEWLDPSRIRDANRRRPGDPLYDKTSLFIPPDAL
KKMSASQRQYWDVKCQYMDVVIFFKVGKFYELYELDAEIGHKELDWKMTLSGVGKCRQVG
ISESGIDDAVQKLVVRGYKVGRIEQLETSDQVKARGAKAVIPRKLVQVVTPSTTTDGNIG
PDAVHLLAIKEGNSGVDNGSVVYGFAFVDCSALKFWIGAISDDASCAALGALLMQVSPKE
VVYENRGLSKEAQKALKKYSTGSALQLTPVQPVNDFMDASEVSKLIQLKGYFKGSSNSWN
HGPDGVVHHDITLPALGTLIDHLSRLMLDDVLRNGDILPYQVYKGCLKMDGQTLINLEIF
SNTADGGPSGTLYAYLDNCVTASGKRLLRKWICHPLKSVEAINNRLNVVEDLLAHPEMVP
LIAQYLRKLPDLERLFGRVRATVQSSASLLLPLFGKKLLKQRVKVFGTLVKGLRFGLDLL
TVLQNAGHIIELLLKLFKVPRLSGSDGLDQYLKQFEAAVDSDFPNYQNHDATDSDAEILS
ILVELFMEKATEWTDVIHAINCIDVLRSFVVTASFPSGAMSRPVLLPQSQNTTLNGENGS
PTLNIKGLWHPFALGENGGQPVPNDVVLGENTDGYHPRTLLLTGPNMGGKSTLLRSTCLA
VILAQLGCYVPCEICVLSLVDIIFTRLGATDRIMTGESTFLVECTETASVLQHATPDSLV
ILDELGRGTSTFDGYAIAYAVFRHLVEKINCRLLFATHYHPLTREFASHPHVSLQHMACA
FRSKSKSPSKSDQELVFLYRLTSGACPESYGLQVAMMAGIPENVVEAASKAGQVMKKSVG
ESFRSSEQRSEFSTLHEEWLKTLLTVSQTGNYNDEDSLDVLFCLQQELKCSYRLAN
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccagaaatcgatcctctccttcttccggaaacccgcgcctgacaaaagcacc
tccaccgccggagacgacggccttggagttaatcagttcgcggcgaaggagcaggagcag
gagcagaagcccgtcggatccaatcagcctccggatctcgaagttcgaggaaccgacact
ccgcctgagaaggtgccacgtcagattcagccggcgaattctgcgagcctgaaagactct
tcgcctttctctagtattatgcataagtttatgaaggtcgatgacacaaataaggcttct
cagagccaccggaatgaaccaaatggtggttcctctaatgattgtacggtatctggtaaa
ctcaatgataccaattccagtaagaaaattaatcgaggtgctgtgatgcatatcgaaagt
gatgaggacattgctggaccagaaacaccggggacacaacgtctagttccacgtatgaag
cgaattcaagaggagattcctaagtctggggataaatttgggagttctttgccagattct
agcaaaagattgaaagttcttggggagccaacagtcttagacaagagccatggggaagca
tctgatatggctagcaagtttgagtggcttgacccatcccgaatcagagatgcaaatcgc
agaaggcctggtgatcctctctatgacaaaacatcactttttataccgcctgatgctctg
aagaaaatgtcggcatcacaaagacaatactgggatgtcaagtgtcagtatatggatgtt
gtgattttctttaaagtgggaaagttttatgagctttatgaactagatgctgaaattggc
cacaaggagcttgattggaaaatgaccttgagtggtgttgggaaatgtcgtcaggttggc
atctctgaaagtgggattgacgatgctgttcaaaagttggttgtccgtgggtataaagtt
ggacggatagagcagctggaaacttctgatcaagtaaaagccagaggtgccaaagctgta
attccaagaaaattggttcaggtagtcacaccatcaaccacaactgatggaaatattggg
cctgatgctgttcatcttcttgcaataaaagaggggaactctggggtcgacaatggttca
gttgtatacgggtttgcttttgttgattgttctgctttaaagttctggattggtgctatc
agtgatgatgcttcgtgtgctgctttgggggctttattgatgcaagtgtcacccaaagaa
gttgtatatgaaaacagagggctctcaaaagaagctcaaaaagcactgaaaaagtactca
acaggttctgcactgcaattgactccagtgcagccagtcaatgattttatggatgcttct
gaagttagtaaattgattcaattgaaaggatacttcaaagggtcttcgaattcatggaat
catggacctgatggtgtggtacaccatgatataactttacctgctctgggtacacttatt
gaccacctatccaggttgatgttagatgacgttttacgcaatggagatatattaccttac
caagtttataagggttgcctcaaaatggatggacagacgctgataaatcttgagattttc
agtaatactgctgatggtggtccatcaggtacgctgtatgcatatctcgataactgtgtg
actgcatctggtaagcggcttttgaggaagtggatctgccatcccttgaagtctgttgaa
gctattaataacaggcttaatgtggttgaagatctactggcacatccagaaatggtgcca
cttattgctcagtatctccgcaagctgccagacttagagaggttgtttggacgggttaga
gcaactgttcagtcgtcagcttccctcctattgccattatttggcaagaaattactaaaa
cagagagtgaaagtgttcgggactcttgtgaaaggcctcagatttggactggatttgtta
acggtattacaaaatgcagggcatataattgagctgttattaaaactatttaaagttcca
cgtctaagtggcagtgatgggcttgatcaatatcttaagcaatttgaagcagctgtagat
agtgacttcccaaattaccagaatcatgatgcaaccgattcagatgctgaaatactctcg
attctagtcgagctattcatggagaaagcaactgagtggactgatgtcatacatgccatc
aactgtattgatgtgctaagatcttttgtagttaccgcaagcttcccaagtggagctatg
tccagacctgttcttttgcctcaatctcaaaatacaaccttgaatggagaaaatggaagt
cctacacttaatattaaaggactatggcatccatttgctcttggtgaaaatggtggacag
cctgtgccaaatgacgtagttctaggtgaaaatactgatggctatcatccacgcacttta
ctattaactggaccaaatatgggtgggaaatcaactcttcttcgttccacatgtctggct
gttatacttgcccagctgggctgttacgtgccttgtgagatatgtgttctctcacttgtg
gacatcatctttacacggcttggtgccactgatcgtatcatgactggcgagagtaccttc
ttagtggaatgcacggaaacggcatcagttcttcaacatgccactccagattctttggtt
attcttgatgaattgggtcgtggaacgagcacgtttgatggttatgccattgcatatgct
gtatttcgtcatcttgtcgaaaagatcaactgcagactgttattcgccacacactatcac
ccgcttacgagagaatttgcttctcatccacatgtttcattgcaacacatggcatgtgct
tttaggtcgaaatctaaatccccttcaaaaagtgaccaagagctggtatttctctatcgc
cttacctcaggggcatgcccagagagttatggattgcaagtagcaatgatggctgggatc
cctgagaatgtggttgaagctgcttctaaggctggtcaagtaatgaagaaatctgttgga
gaaagcttcaggtccagtgaacagagatcggaattctcaactctccatgaggagtggctg
aagacactgttaacagtttcacaaaccggtaattataacgacgaagattcattggacgta
ttgttttgcttgcagcaggaactaaagtgctcatatagattggccaactga
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