Rosa chinensis (China rose): 112190991
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Entry
112190991 CDS
T06020
Name
(RefSeq) polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00040
Pentose and glucuronate interconversions
rcn01100
Metabolic pathways
Module
rcn_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112190991
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
112190991
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
112190991
NCBI-ProteinID:
XP_024186281
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Position
2:73427277..73429906
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AA seq
415 aa
AA seq
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MALKLVMAMFSLLMFLSLTSLTSGRRELLADGGDFDVTNAKYGAKPDSDITEALANAWKD
ACASTSASKVIVPKGTFKVKEASFKGPCKAPIELQVQGTLQAPEDSSQLSKQDTWIEFLY
LNDFTLSGGGTFDGQGQKTWKAIDPKNAKAGTINIRFHAVKKSLVKDITSLNSKNFHINV
ISCEQLTFDHVTVTAPGDSPNTDGIHIARSTGVNVTDTNIGTGDDCISIGDGTKQLTITK
VTCGPGHGISVGSLGRYDKEDPVEGINVKNCTLTKTTNGVRIKTWAKNPQASTCSEIHFE
DIIMNDVQNPIVVDQEYCPWNQCDKQASSKIKISDVSFKNIRGTTSTPLGVKIVCAKGLP
CEKVEMTGIDLKFTGTGALTSQCTNVKPTIANVAQPLACATDAPVQAGPAEKSND
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggctctcaaacttgtcatggctatgttttcattacttatgttcttatccttgacatcc
ttgacatctggaaggagagagcttctagccgatggtggtgactttgacgtgaccaacgcg
aaatatggtgcaaagcccgattctgatattactgaggctttagcaaatgcttggaaagat
gcctgtgcatcaacatcggcaagtaaagttattgttccgaaagggacattcaaagtaaaa
gaagcaagtttcaaaggtccttgcaaggctcctattgagcttcaggtccaaggcacatta
caggcgccagaagactcaagccaattatcgaaacaagatacttggatcgagtttttatac
ctcaacgacttcacactatcgggtggtggaacctttgatggccaaggacaaaaaacttgg
aaagccattgatccaaaaaacgcaaaggctggcaccattaatatcaggttccacgccgtc
aagaagtcattagttaaggatataacttcacttaatagcaagaacttccacatcaacgta
ataagttgcgagcaacttacgttcgatcatgtcaccgtcactgcacctggagatagccct
aacacagatggaatacatatcgcgcgctcaaccggggtcaacgttactgatacaaatatc
ggaaccggagatgattgcatttcaattggtgatggtaccaagcaacttacaataactaag
gttacttgtggaccaggccatggaataagcgttggaagtcttggaaggtacgacaaagaa
gaccctgtggaaggaatcaatgttaagaactgtaccctcactaaaacgactaatggtgtt
agaatcaagacatgggctaaaaatcctcaagctagcacttgctcagaaattcactttgag
gatatcatcatgaatgatgttcaaaacccaatcgtcgtagatcaagaatactgcccatgg
aatcaatgtgataaacaggcttcatcgaaaatcaagatcagcgatgtgagtttcaagaac
attagagggacgacttccactccgttgggcgtgaagattgtatgcgccaagggcttacca
tgtgagaaggtggagatgactggcattgatctcaaattcaccggcacaggtgcactcacg
tctcaatgtacgaatgtcaaacccacaattgctaatgtggcacagcctcttgcttgtgct
accgatgctcctgtacaggctggaccagctgagaagtctaatgactaa
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